Leptolyngbya sp. O-77: O77CONTIG1_02203
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Entry
O77CONTIG1_02203 CDS
T04251
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
let
Leptolyngbya sp. O-77
Pathway
let03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
let00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O77CONTIG1_02203 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
let03019
]
O77CONTIG1_02203 (cshA)
03009 Ribosome biogenesis [BR:
let03009
]
O77CONTIG1_02203 (cshA)
Enzymes [BR:
let01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O77CONTIG1_02203 (cshA)
Messenger RNA biogenesis [BR:
let03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O77CONTIG1_02203 (cshA)
Ribosome biogenesis [BR:
let03009
]
Prokaryotic type
rRNA helicases
O77CONTIG1_02203 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BAU42382
LinkDB
All DBs
Position
2447077..2448570
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AA seq
497 aa
AA seq
DB search
MTLSFTSLGLSEARARHLEKAGFAAPTPIQAQAIPHLLSGRDVVGLAQTGTGKTAAFSLP
ILEQIDVNNNAVQALILTPTRELAIQVYQSIRTLTDDRRLKILPTYGGQSIDLQINRLQR
GVQIIVGTPGRVLDLLKRGDLKLNKLGWLVLDEADEMLNMGFIQDVEKILSQSPPERQTA
FFSATMDPSIRELAAKFLRSPVTVSIEQPKAAPTRINQVVYMVPRGWTKARALQPILELE
DPESALIFVRTRKAAADLTRQLQAAGHSVDEYHGDLSQSQRERLLLRFRQRQVRWVVATD
IAARGLHVDDLSHVINYDLPDSVESYVHRIGRTGRAGKEGTAITLIQPLDKRKLRDIERH
IRQQLQTGTIPTRAQIEARYLEKLQGQLREALVGDRLASFLPIVTQLSEEYDMRAIAAAA
LQMAYDQTRPAWMRGDHAYSDDAPMEESRPRSDYSSGAQAQAPSSAPKLRSTNRLAALSG
GDSLNSPGTSPENFREP
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttcatttactagtctgggtttgtctgaggcgcgggcgcgccatctagaaaag
gctggatttgccgcaccaacgccgattcaggcacaggcgattccccatctgctgtcggga
cgcgacgtggtggggctggcccagactggaacgggcaaaacggcggccttttcgctgccg
attttggaacaaattgatgtcaacaacaacgcggtgcaggcgctcatcctgacaccgacc
cgcgagctggcgatccaggtctatcagtcaattcggacgctgacggacgatcgccgactg
aaaattttgccgacctacggcggacagtccatcgacctgcaaatcaaccgcctccagcgg
ggcgtgcaaattatcgtgggcacgcctggacgggtgctggacttgctgaagcggggcgac
ctgaagctgaacaagctgggctggctagtgctggatgaagccgatgaaatgctgaacatg
ggctttattcaggatgtggaaaaaattctgagccagtcgcctccagagcggcagaccgcg
tttttctcggccacgatggatccatcgattcgagaactggcggctaagtttttgcgatcg
cccgtcacggtcagcatcgaacagcccaaggctgcaccgacgcggattaatcaggtggtg
tacatggtgccgcgtggctggacgaaggcccgcgctctccaacccatcttggagctagaa
gaccccgaatcggcgctgatctttgtccgcacgcgcaaggccgccgccgacctgacccgc
caactgcaagccgctggacacagcgtggatgaatatcatggcgacctcagccagtctcag
cgggagcggctgctgctgcgcttccggcagcggcaggtgcgctgggtggtggcgacggac
atcgccgcccgcggtctgcacgtggacgacctcagccatgtgattaactacgacctgccc
gacagtgtggagagctatgtccaccgcatcggccgcacggggcgtgctggcaaagagggc
acggcgattacgctgatccagccgctggacaagcgcaagctgcgggacatcgagcggcac
atccgccagcagttgcagacgggcaccattcctacccgcgctcagatcgaagcccgctat
ttggagaagcttcagggacaactgcgggaagcgctagtgggcgatcgcctcgcctccttc
ctgccgatcgtgacgcaactgagcgaagagtacgacatgcgggcgatcgccgctgctgct
ctgcaaatggcctacgaccagacgcgccccgcttggatgcgcggcgaccacgcctactcc
gacgatgcgccgatggaagaaagccgcccccgcagcgactacagcagcggggcccaagcc
caagccccatcaagcgctccaaaacttcggtcaacgaataggctggctgcgctctctgga
ggagacagcctcaatagccccggcacgtcaccagaaaacttcagagaaccttga
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