Leptolyngbya sp. O-77: O77CONTIG1_03979
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Entry
O77CONTIG1_03979 CDS
T04251
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
let
Leptolyngbya sp. O-77
Pathway
let03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
let00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O77CONTIG1_03979 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
let03019
]
O77CONTIG1_03979 (rhlE)
Enzymes [BR:
let01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O77CONTIG1_03979 (rhlE)
Messenger RNA biogenesis [BR:
let03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O77CONTIG1_03979 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_22
P-loop_SecA
DUF8086
Sacchrp_dh_NADP
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BAU44142
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All DBs
Position
4437341..4438882
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AA seq
513 aa
AA seq
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MSFSELGLADEIVRAVAARGYTTPTPIQAKAIPAVLAGHDLLASAQTGTGKTAGFTLPIL
HLLAAAGLSASPGKPMPRVPVRSLVLTPTRELAAQVEESIREYGQFLPLRSTVVYGGVGM
QPQVQRLRGRIDILVATPGRLLDHVQQGTVDLSRVEILVLDEADRMLDMGFLPDIRRILA
QLPKQRQNLLFSATFSSDIKKLAAGLLHNPVTIEVAPPNATADLVEQKVYPVDRDKKRQL
LTHLIQENNWFQVLVFTRTKHGADHLVKHLTTHRIAAMAIHGNKSQAARTRALAQFKDGS
LQVLVATDIASRGIDISELPHVINFDLPHVPEDYVHRIGRTGRAGTEGEAASLVCVDELK
LLADIEKLIRRSLPQEIVPGFEPDLNAKPEPIPKRAQPSGGRGAGDRVAGRAAGRRAHIL
TKRRVALLRKLPRRAGAIALNPVATQTAPIPAAVDLALALRVPVALPVAPLAKVGITNNS
AGQRVHRFCGLQNVGAARWKSPWNPQRRSPLPG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttctgaactcggactggccgatgagattgtccgcgccgtagctgcacgcggc
tacaccacccctaccccaatccaggcgaaagccatccccgcagtgctggccgggcatgac
ctactcgccagcgcccaaaccggaaccggaaaaaccgccggttttacactacccattctg
cacctgctggcggccgcaggactcagcgcctcccccggcaagcccatgccgcgcgttccc
gtgcgatcgctcgtcctcacgcccacccgcgaactagccgcccaagtcgaagaaagtatc
cgcgaatatggtcagtttttgcccctgcgctccaccgtcgtctatggcggtgtgggaatg
cagccccaggtgcagcggctgcgcggccggatagacatcctggtggccacgccagggcgg
ctgctggatcatgtgcagcagggcacggtggatttgtcgcgggtggaaatcctggtgctg
gatgaagccgatcgaatgctggatatgggctttttgcccgacattcgccgcatcctggcg
caactgcccaagcagcgccaaaacctgctgttttctgccacattttcgagcgacatcaag
aagctggcggccggtctgctgcacaaccctgtcaccatcgaagtcgctccgcccaacgcc
accgccgatctggtggagcaaaaggtttacccggtcgatcgagacaaaaagcgccaactg
ctgacccacctgatccaggaaaacaactggtttcaggtgctggtgtttacgcgcaccaag
catggcgcagatcatttagtgaaacacctgaccacgcaccgcattgccgctatggcaatc
cacggcaacaagagccaggccgcccgcacccgcgccctggcccagttcaaagacggcagc
ctgcaagtgctggtggcgacggacatcgcctctcgcggcatcgacatcagcgaactgccg
cacgtcattaactttgacctgccccatgttcccgaagactatgtgcatcgcatcgggcgc
accgggcgggccggcaccgagggcgaggcggcctcgctagtctgcgtagacgagctaaag
ctgctggcagatatcgaaaaactgatccggcgatcgctccctcaggaaatcgtccctggc
tttgaacccgacctgaacgccaagccagaacccatccccaaacgggcgcaaccgtcaggc
gggcggggcgcgggcgatcgggtggcgggtcgggcggcgggtcgtcgcgctcacattctg
acaaagcgccgggtcgcgctgctgcgaaaactgcctcgccgggccggggcgatcgcccta
aacccagtagcaacacagacagcaccgatcccagccgccgtcgatctcgccctggctctc
cgggttcccgtcgctctgcccgtcgccccgctagctaaggtcgggattacaaataattca
gcgggtcaacgggttcaccgtttttgcggacttcaaaatgtaggtgcggcccggtggaaa
agcccgtggaacccacagcggcgatcgcctctccccggctga
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