Leucobacter muris: Leucomu_05930
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Entry
Leucomu_05930 CDS
T05802
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
leu
Leucobacter muris
Brite
KEGG Orthology (KO) [BR:
leu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leu03019
]
Leucomu_05930 (hrpA)
Enzymes [BR:
leu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Leucomu_05930 (hrpA)
Messenger RNA biogenesis [BR:
leu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Leucomu_05930 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
nSTAND_NTPase5
NACHT
PhoH
AAA_23
T2SSE
nSTAND3
ResIII
AAA_16
SLFN-g3_helicase
FtsK_SpoIIIE
SRP54
WHD_HA2
Zeta_toxin
AAA_SelU
TsaE
Motif
Other DBs
NCBI-ProteinID:
QAB17523
UniProt:
A0ABX5QET1
LinkDB
All DBs
Position
complement(1245031..1249164)
Genome browser
AA seq
1377 aa
AA seq
DB search
MTQPRIEFPADLPVSQMRDEIEAAIRDNQVVIVAGETGSGKTTQLPKIALALGRERIAHT
QPRRIAARTIAERIAEELGSELGGLVGYQVRFTDKVSEQTRIRLMTDGILLNAIHRDRDL
RAYDTIIIDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDPESFAEHFADPRTKR
PAPIVEVSGRTYPVEIRYRPLVEKIERPETGAGRSEADAKRSPAGRAGTTAPESRVVTVE
RDLFDAIGDAVEELGAEDRGDVLVFLSGEAEIRDAADALRGRLGANRARPIEILPLYGRL
SAAEQHRVFERASGASAAARRIVLATNVAETSLTVPGIRYVVDAGTARISRYSARSKVQR
LPIEPVSQASANQRSGRSGRTSPGIAIRLYSEEDFESRPEFTEPEIRRTGLASVILQMLS
LGLGDIARFPFLTPPDQRGIADGLGLLAELGAVEPLDRGGAPRDGRGKGRSGRAGGSANH
RITKIGRELSRLPIEPRFARMVVEARRHEVVPQVLAIVAGLTIQDVRERPQEQRAQADQL
HARFVDPQGDLMTLLNLWDYLQERQRELSSSAFRRLCKAEYLKFLRVREWMDLTRQLARI
AGVRGGAAAARPRPRGADAERDDTTGAGSGSESGSGSGSGSGEAIHRSVLAGLLSQLGVR
DDRQDRSAPARGRGAAGAVKRKPAQEYVGSRGTRFVLYPGSVLAKKPPEVVMSVELVETS
RLFARSNAVVDPAWAEELAGPLAKRQVSEPHWEKKQGAAVAYERVTLFGVPIVDRRRVQL
ARFDREHARELFIRHALVDGEWDSRQAFDRANRQLRRELEQLEERTRRRDLVSDDEAVYD
FYDARIPADVVSTRSFEGWWKEAQRAQPKLLTMRREDLVEGEAAEVDESEFPRQWRHGDQ
TLRLKYRFDPTADDDGVTVNVPLPLLPRLERGDFEKLVPGLRQELVTALIKTLPKAIRKH
VVPAADWARTLLETVEPRLAATPSPVAEPQRRPGSSSEPTAAPSLLQLLADEIRRRTSVP
VSPDDFDPSRLPAHLTPTFRVVDGRGRTVGSGKDLAALQAAHKDRATQGVAKVAAAAMPK
SDLERKGATGWVFGELPRHVDTAYAKGRGSGAGVVRAYPAVVDRRTSVDLVLVADEVEQT
RLSRRGIRRLVALSSPSPASYIRDHLSNQEKLLLGAGPYRSLDAAIADVSLAVADGVIRR
HAPDGLVWSEAVFERIANDYARSLIDEIYAAIALTARVLDGARLARKAIDGTKSIQVLGQ
VADAAAQVDRLVFDGFVARTGLARLARLPVYFEAVQWRCRGLSENPGRDRARQNEVDRAL
ALFEQAGGSIPLPEQAPEHLVRARWLIEELRVSLFAQHLRTAEPVSLQRIQKLLREA
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaccccgcatcgaattccccgcggatctccccgtctcgcagatgcgcgacgag
atcgaggcggcgatccgcgacaaccaggtggtcatcgtggcgggtgagaccggctcgggc
aagacgacccagctgccgaagatcgcgctcgccctcggccgcgaacgcatcgcccatacc
cagccgcgccgcatcgcggcccgcacgatcgccgagcgcatcgccgaggagctcggctcc
gagctcggcgggctcgtcggctaccaggtgcgcttcaccgacaaggtctccgagcagacc
cggatccgcctcatgaccgacggcatcctgctcaacgcgatccaccgcgaccgcgacctg
cgcgcctacgacaccatcatcatcgacgaggcccacgagcggtcgctcaacatcgacttc
ctgctcggctacctcaagacgctgctgccccgccgacccgacctcaaggtgatcatcacc
tcggccaccatcgaccccgagtcgttcgccgagcacttcgccgatccgaggacgaagcgc
ccggcccccatcgtcgaggtgtcgggccgcacctacccggtcgagatccggtaccggccg
ctggtcgagaagatcgagcggcccgagacgggcgcgggtcgctcggaggcggacgccaag
cgctcgcccgcgggccgagcgggtaccaccgcacccgagtcccgggtcgtcacggtcgag
cgcgacctcttcgacgctatcggagacgcggtcgaggaactcggcgcagaggatcgaggc
gacgtgctcgtgttcctcagcggagaagccgagatccgcgacgccgccgacgccctgcgc
ggccgcctcggcgcgaaccgcgcgagaccgatcgagatcctgcccctctacggccgcctc
agcgcagccgaacagcaccgcgtcttcgagcgcgcgagcggcgcgagcgcggctgcgcgg
cgcatcgtgctcgcgacgaacgtggccgagacctcgctcacggtgccgggcatccgctac
gtcgtcgacgcgggcaccgctcgcatctcccgctattcggcgcgcagcaaggtgcagcgt
ctcccgatcgagcccgtctcccaggcgagcgccaatcagcgttcggggcgctccggacgc
acgagccccggtatcgcgatccgcctctactccgaggaggacttcgagagccgccccgag
ttcaccgaacccgagatccgccgcaccggcctcgcatccgtgatcctgcagatgctctcg
ctcggcctcggcgacatcgcccgcttcccgttcctcaccccgcccgaccagcgcggcatc
gccgacggcctcgggctgctcgccgaactcggcgccgtcgaaccgctggaccgcggcggc
gcgccccgcgacgggcgcggcaaggggcggagcggcagggcgggcggatccgcgaaccac
cgcatcacgaagatcggccgcgagctctcgcgtctgccgatcgagccgagattcgcgcgc
atggtcgtcgaagcgcgcaggcacgaggtggtgccccaggtgctcgcgatcgtcgcgggc
ctcacgatccaggacgtgcgcgagcggccgcaggagcagcgcgcgcaggccgaccagctg
cacgcccgcttcgtcgacccgcagggcgacctcatgaccctgctgaacctctgggactac
ctgcaggagcggcagcgcgagctgtcgtcgagcgcgttccgccgcctgtgcaaggccgaa
tacctcaagttcctgcgcgtgcgcgagtggatggacctcacccgccagctggcgcgcatc
gcgggggtgaggggcggtgcagccgccgctcgaccccgcccccgcggcgccgacgcggag
cgggatgacacgacgggcgcgggatcgggatccgaatcgggatcgggatcgggatcggga
tcgggcgaggcgatccaccgctccgtcctcgccggcctgctctcgcagctcggcgtgcgc
gacgatcggcaggatcgcagcgctcccgctcgcggccggggcgccgcgggcgccgtgaag
cgcaagcccgcccaggagtacgtcggatcccggggcacccgcttcgtgctgtacccgggg
tcggtgctcgccaagaagccgcccgaggtggtgatgagcgtcgaactcgtcgagacctcg
cggctcttcgcgcgctcgaacgccgtggtcgacccggcctgggccgaggagctcgcgggg
ccgctggctaagcgccaggtctcagagccgcactgggagaagaagcagggcgccgccgtc
gcctacgaacgggtcaccctcttcggcgtgcccatcgtcgaccgccgccgcgtgcagctc
gcccgcttcgaccgcgagcacgcgcgcgagctgttcatccgccacgccctcgtcgacggc
gagtgggactcgcgccaggccttcgaccgcgccaaccggcagctgcgccgcgagctcgag
caactcgaagagcgcacccgccgccgcgatctcgtgagcgacgacgaggccgtctacgac
ttctacgacgcccgcatccccgccgacgtcgtctcgacccgcagcttcgaggggtggtgg
aaggaggcgcagcgcgcgcaaccgaaactgctcaccatgcgccgagaagacctcgtcgag
ggcgaggccgccgaggtcgacgagagcgagttcccccgccagtggcggcacggcgaccag
acgctgcgcctgaagtaccgcttcgacccgaccgccgacgacgacggcgtcaccgtgaac
gtgccgctgccgctgctgccccgcctcgaacgcggcgacttcgagaagctcgtgcccggt
ctgcgccaggagctcgtcaccgcgctcatcaagacgctgccgaaggcgatccgcaagcac
gtcgtgcccgccgcggactgggcgcgcacgctgctcgagacggtggagccgcgactggcg
gcgacaccgagcccggtcgccgagccgcagcggcggccgggttcttcgtcagagccgacc
gccgcaccctcgctgctgcagctgctcgccgacgagatccgccgccgcacgagcgtgccg
gtctcccccgacgatttcgacccctcgcggctgcccgcccatctcacccccacgttccgc
gtggtcgacgggcgcgggcgcaccgtcggctcgggcaaggacctggccgcgctgcaggcc
gcccacaaggatcgcgcgacgcagggcgtcgcgaaggtcgcggcggcggccatgccgaag
agcgacctcgagcgcaaaggggcgaccggctgggtcttcggcgaactgccccggcacgtc
gacaccgcctacgcgaagggccgcggatcgggcgcgggcgtggtgcgcgcctaccccgcc
gtggtcgaccgccgcacgagcgtcgatctcgtgctcgtggccgacgaggtcgagcagacc
cggctctcgcggcgcgggatccgccgcctcgtcgcgctgagctcgccctctccggccagc
tacatccgcgaccacctctcgaaccaggagaagctgctgctcggcgcggggccctaccgc
tcgctcgacgccgccatcgccgacgtgtcgctcgcggtcgccgacggcgtgatccgccgt
cacgcccccgacgggctggtgtggtcggaggccgtgttcgagcgcatcgcgaacgactac
gcgcgatccctgatcgacgagatctatgccgcgatcgcgctcaccgcgcgcgtgctcgac
ggggcgcgactcgcccgcaaggcgatcgacggcaccaagtcgatccaggtgctcggccag
gtcgccgacgcggccgcgcaggtggatcgcctcgtcttcgacggcttcgtggcgcgcacc
gggctcgcgcggctggcgcggctgcccgtgtacttcgaggcggtgcagtggcgatgccga
gggctctccgagaaccccgggcgcgaccgggcgcggcagaacgaggtcgaccgcgcgctc
gcgctcttcgagcaggcgggcgggtcgatcccgctgccggagcaggcgcccgagcatctc
gtgcgcgcccgctggctcatcgaggagctgcgggtgagcctgttcgcgcagcacctgcgc
acggccgagccggtgtcgctgcagcgcatccagaagctgctgcgcgaggcgtag
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