Leisingera sp. NJS201: ETW23_11160
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Entry
ETW23_11160 CDS
T08375
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lev
Leisingera sp. NJS201
Pathway
lev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETW23_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lev03019
]
ETW23_11160
03009 Ribosome biogenesis [BR:
lev03009
]
ETW23_11160
Enzymes [BR:
lev01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ETW23_11160
Messenger RNA biogenesis [BR:
lev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETW23_11160
Ribosome biogenesis [BR:
lev03009
]
Prokaryotic type
rRNA processing factors
ETW23_11160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Phage_TAC_1
Motif
Other DBs
NCBI-ProteinID:
QBR36622
LinkDB
All DBs
Position
complement(2264996..2268088)
Genome browser
AA seq
1030 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDDEKPAKPKRSRRS
KSAAKAAKTSSDDAVETKEVEASEEKTAEIAGMETIDLSDSAEAGDDLADVPEGSSPVEH
VAETPVEEPEDDDASAPEAAEAEVAAGPAETAGEEAPEGAAVEAAAAEEAPAEAADEPAA
EANAGTEAAAEAAKDDAETAAPEAASANAGADTADSGDSDEDAGETGRADATSKDDSIES
VADEDDSEDIRPPRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYC
VLMPNTARGGGISRKITNADDRKKLKDIATELDVPTGAGLIVRTAGAKRTKSEIKRDYEY
LQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKM
IMPSHAKNVKNYQEGLPLFARFQVESYLAGMFNPTVQLKSGGYIVIGVTEALVAIDVNSG
RATKQGSIEETALNTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKL
KTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQI
EEEGTRRRSREVLVRCPVSIANFLMNQKREHIAQIEARYGLSVRIEGDPHLVSPDFVLEK
FKTASRVVPAATAPVVSVDTSIMDQVDAEEATQDEEEAPAAVEEAASTDDDAAQDDKPKR
KRRRRRRRKSGNGEQGQDGENGDEASDEPKQQDDAAEPAEAAAEDKGAAAEEVKEKKPSR
SRTRTRSRKPKAKPAEAETAEEAPAAVEPAEASVQDAPAAADAEEAPAAETVAQAPSEDA
AAPDAEPAADSAAEAQDGAPAEPTVPAEATAPAEATAPAEVTAAEVEAAPAEPVAAEAEA
VPEKEPVEAAPDAAAEAVAEQPAAEEAAQPEQTSSEQEKQPEPAMAVAAADPEPAAPPKP
KRRGWWSVGS
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttatcgacgccacccacgcggaagagacccgtgttgtggttgtg
gatggaaacaaggttgaggaattcgactttgaatccgaaaataaacgccagcttgctggc
aacatttacctcgcaaaagtaacccgggtcgaaccgtcgctgcaggcggcatttgtggac
tatggcggcaaccgtcatggtttcctggcgttctccgaaatccacccggattattaccag
atccccgtcgccgaccgtgaggcgctgatggaggaagaacgcgcctatgccgaagcgatg
cgcgcccgcgacgaggaagacgacgaaaaaccggccaagcccaaacggtcgcgccgctcc
aaatccgccgccaaggctgccaagacttcttccgatgatgcggtggaaaccaaggaggtt
gaggcctctgaggagaagaccgctgaaatcgccggaatggagaccatcgacctgagcgac
agtgctgaggccggggatgatctggcggacgtgccggaagggtcctcgccggtggagcat
gtcgcggaaacgccggtggaagagccggaagacgatgatgcgtctgcacctgaggcagcc
gaagctgaagtggctgccggacccgctgagactgctggcgaagaagcacctgaaggggcg
gcagttgaggccgccgctgctgaagaggcacccgcagaagctgcggatgagcctgcagcc
gaggcaaatgccggcaccgaagcagccgccgaagcagccaaggacgatgcagaaacggct
gctccggaggccgcatctgccaatgccggtgctgacaccgcagacagcggcgacagcgat
gaagacgcgggcgaaaccggccgtgccgatgcaacctccaaagatgacagcatcgaatcc
gttgccgatgaggacgacagcgaggacatccgtccgccgcgcaagccgcgtccgcgccgc
tacaagatccaggaagtcatcaaggtccgccaggtcctgctggtgcaggtcgtcaaggaa
gagcgcggcaacaagggtgcggccctgaccacctatttgtcgctggccggccgctattgc
gtgctgatgcccaacactgcccgcggcggcggcatctcccgcaaaatcaccaacgcggat
gaccgcaagaagctgaaggatatcgcaaccgaactggacgtgccgaccggcgcgggcctg
atcgtgcgcaccgccggtgccaaacgcaccaaatccgagatcaagcgcgactatgaatac
ctgcagcggatgtgggaacagatccgtgagctgacactgaagtccatcgcgccggccaag
atctatgaagaaggcgacctgatcaaacgctcgatccgcgatctttacagccgcgagatc
gacgaagttctggttgagggcgagcgcggctaccgtatcgccaaggacttcatgaaaatg
atcatgccgtcccatgccaagaacgtgaagaactatcaggaagggctgccgctgtttgcc
cgcttccaggtggaaagctacctggcaggcatgttcaacccgaccgtgcagctgaaatcc
ggcggctacatcgtgatcggcgtgaccgaggcgctggtggcaatcgacgtgaactcgggc
cgggccaccaaacagggctcgatcgaggaaaccgcgctcaacaccaatctggaggcggct
gaagaagtcgcccgccagctgcgtctgcgcgaccttgccggtttgatcgtcatcgacttc
atcgacatggacgagcgcaagaacaacgccgccgtcgaaaagcgcatgaaggacaagctg
aagaccgaccgtgcccgcatccaggtgggccggatctcgggctttggcctgatggaaatg
tcgcgccagcgcctgcgccccggcatgatcgaggcgaccaccgcgccgtgcccgcattgc
cacggcaccggcctgatccgctccgacgactcgatggcgctgtcgatcctgcgccagatc
gaggaagagggcacccgccgccgctcccgcgaagtgctggtgcgctgcccggtctccatc
gccaatttcctgatgaaccagaagcgcgaacacattgcccagatcgaggcgcgctacggc
ctgtccgtgcgcatcgaaggcgatccgcatctggtcagcccggattttgtgctggagaag
ttcaaaaccgcatcccgcgtggtgcctgctgcgactgctccggtggtgtccgttgatacc
tcgatcatggatcaggtggacgctgaggaagccactcaggacgaagaagaagcgcctgca
gccgttgaggaggccgccagcaccgatgacgatgctgcgcaggacgacaagcccaagcgc
aagcgccgccgccgccgccgccggaaatccggcaatggcgagcagggccaggatggcgaa
aacggcgatgaggcgtctgacgagccgaagcagcaggatgacgcagctgagcctgcggag
gctgccgcagaagacaaaggcgcagccgcagaagaggtgaaggaaaagaaaccttcccgc
agccgcacccgtacccggtcgcgcaagccgaaggccaaaccggctgaggcagagactgca
gaagaggctcccgccgctgttgagcctgccgaagcctctgtgcaggacgccccggccgcg
gctgacgctgaggaggcccctgcagcggaaaccgttgcacaggcgccgtctgaagacgct
gctgccccggatgctgagcctgccgccgacagtgctgcagaagcccaagatggcgctccg
gcggaacccactgttccggcagaagccactgctccggcagaagccactgctccggcggaa
gtcaccgctgctgaagtggaagctgcgccggcagaaccggttgccgctgaagccgaggct
gtaccggagaaagaacctgtggaggcagcacctgatgcggctgccgaggcggtggcggaa
cagcctgctgcagaagaggccgcccagccggagcagacgtcttcggaacaggagaagcag
ccggaacctgcgatggccgttgctgcggctgacccggaaccggcagcaccgcccaagccg
aaacgccgcggctggtggtcggtgggcagctga
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