Candidatus Levibacter sp. Uisw_134_01: ABXT66_10970
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Entry
ABXT66_10970 CDS
T11558
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
levi Candidatus Levibacter sp. Uisw_134_01
Pathway
levi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
levi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT66_10970 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
levi03021
]
ABXT66_10970 (rho)
03019 Messenger RNA biogenesis [BR:
levi03019
]
ABXT66_10970 (rho)
Transcription machinery [BR:
levi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABXT66_10970 (rho)
Messenger RNA biogenesis [BR:
levi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABXT66_10970 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_25
AAA_22
AAA
Spore_III_AA
ResIII
Fungal_virus_P2_C
DUF6360
Motif
Other DBs
NCBI-ProteinID:
XOJ58619
LinkDB
All DBs
Position
complement(2160343..2161602)
Genome browser
AA seq
419 aa
AA seq
DB search
MHLKELKAKNPADLLDYAESLEIENASTLRKQDMMFACLKRLAENDIGIYGNGVLEVLSD
GFGFLRSPESNYLAGPDDIYISPSQIRKFSLRTGDTVEGKIRAPKDGERYFALLKVETIN
FEDPEAVRHRINFDNLTPLYPQSKINFETEFDPENKDITTRVVEMVAPMGKGQRGLIVAP
PRTGKTMMLQSIAQSISKNHPEIYLIVLLIDERPEEVTDMQRSVDGEVISSTFDEPASRH
VQVTDMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKR
FFGAARNIEDGGSLTIIATALVETGSRMDEVIFEEFKGTGNSEVILDRKLSDKRTFPAID
VTKSGTRKEELLVEKDTLSRMWVLRRILMQMGPVDAMDFLADKLKQSKSNEDFFRAMNK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaaagaattaaaagcaaaaaatccagctgatttacttgattatgctgaaagt
ttagaaatagaaaatgcaagtacattacgtaagcaagatatgatgtttgcttgtttaaaa
agactcgcagaaaatgatataggtatttatgggaatggtgttcttgaggttttatctgat
ggctttggttttttgagatcaccagagtctaattatttggctggccctgatgatatatat
atatcgccaagtcaaataagaaaattcagtttaagaactggcgacacagtagaaggaaaa
atacgagctccaaaagacggggaaagatactttgctttattaaaagttgaaacaataaat
tttgaagatccagaagctgtaagacatagaataaattttgataatttaacacctctttat
ccacaatctaaaattaactttgaaactgaatttgatccagaaaataaagatatcactacc
agagtagtagaaatggttgcgcctatgggaaaaggtcaacgtggattaatagtagcgcct
cctagaacaggtaaaaccatgatgctacagtctatagctcagtctatttcaaagaatcat
ccagaaatatatttaattgttttattaattgatgaacgaccagaagaagtaacagatatg
caaaggtctgttgatggggaagtaatcagttcaacttttgatgaacctgcatctcgtcac
gttcaggttacagacatggttatagaaaaagctaaacgcttggttgagcataaaagagat
gtagttatactcttagattctattacaaggctagcaagagcgtacaacacagttatacca
tcaagtggaaaagttttaactggcggcgttgacgcaaacgctttacaaagacctaaaaga
ttttttggagcagctagaaacattgaagatggaggctctcttactattattgccaccgcc
ttagtagaaacaggatctcgaatggatgaagtaatatttgaggaattcaagggtacaggt
aacagcgaagttatcctggatagaaaactctctgacaaaaggacttttcctgcgatagat
gtgacaaaatcaggaacaagaaaagaagagcttttagtagagaaagatactttatctaga
atgtgggttctcagaagaatattgatgcaaatgggtccagtcgacgccatggactttcta
gctgacaaactcaaacagagtaaatccaatgaagacttctttagggcaatgaataaataa
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