Lelliottia sp. WB101: DAI21_02175
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Entry
DAI21_02175 CDS
T05398
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lew
Lelliottia sp. WB101
Pathway
lew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAI21_02175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lew03019
]
DAI21_02175
03016 Transfer RNA biogenesis [BR:
lew03016
]
DAI21_02175
Enzymes [BR:
lew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DAI21_02175
Messenger RNA biogenesis [BR:
lew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DAI21_02175
Transfer RNA biogenesis [BR:
lew03016
]
Prokaryotic type
tRNA degradation factors
DAI21_02175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
MetOD2
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AVY96585
LinkDB
All DBs
Position
complement(470703..473150)
Genome browser
AA seq
815 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTSMAVDMALRTHEIPYVWPAA
VENQVKDLKEQVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPNTPLDSEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITAFRSVLAELGLELPGGSKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRYDQVGQRLTGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGSNGKTGGRRRQAGKKVNFEPDAAFRGDKGKAAPKP
PKAKKEKGAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagcagaaaagtacgcgaatcctatcccaagc
cgcgagttcatcatcgaacacttaacaaaacgcgaaaagcccgccaatcgtgaagaactt
gccgttgaattaaacatagaaggcgaagagcaaattgaagcccttcgtcgccgactgcgc
gccatggagcgtgatggccagctggtctttacgcgtcgccagtgctacgcgctgccggaa
cgtctcgacctgctcaaaggcaccgtcatcggccatcgcgatggtttcggcttcctgcgc
gtcgaaggccgcaaagacgacctgtatctgtcctctgaacagatgaaaatgtgcatccac
ggcgatcagattctggcgcagccgttaggggctgaccgcaagggccgccgcgaagcgcgc
gtcgttcgcgtgctggtacccaaaaccagccagatcgtcgggcgttacttcaccgatgca
ggcgtgggctttgtggtgccagacgatagccgtctgagcttcgacatcctgatcccgccg
gaagaggtgatgggcgcacgcatgggctttgtggtggtggtcgaactcacccagcgtcca
acgcgccgcaccaaagcgattggtaagatcgtggaagtgctgggcgataacatgggcacc
agcatggccgtagatatggcgctgcgtacgcatgaaatcccttacgtctggccggctgcg
gttgaaaaccaggtcaaagatctgaaagagcaggtcccggaagaggccaaaatcggccgc
gtggatctgcgcgatctgccgctggtaaccattgatggcgaagacgcccgcgacttcgat
gacgccgtcttctgcgagaaaaaacgcggcggcggctggcgtttgtgggtggcgattgct
gacgtcagctattacgtccgccccaacaccccgctggacagcgaagcccgcagccgtggt
acatccgtgtacttcccgtcgcaggttgtgccaatgctgccggaagtgctctccaacggg
ctgtgctccctgaacccgcaggttgatcgtctgtgtatggtctgtgaaatgaccatctcc
accaaagggcgcttaaccggctataaattctatgaagcggtgatgagctcgcacgcgcgc
ctgacatacaccaaagtctggcacatgctgcagggcgaccaggagctgcgcgagcaatat
gcgccgctggtcaaacatatcgaagaactgcacaacctctacaaagtgctggaccaggcg
cgcgaagagcgcggcgggatctcctttgagagcgaagaggcgaagttcatcttcaacgct
gagcgtcgtatcgaacgtatcgagcagacgcagcgtaacgatgcccacaaactcattgaa
gagtgcatgatcctggcaaacatctcggcggcgcgtttcgttgagaaagccaaagagcct
gcgctgttccgtattcacgataaaccgaccactgaagcgattaccgcgttccgttcggtg
ctggcggagctgggcctggaactgccgggtggcagtaaaccagagccgcgcgattacgcc
gagctgctggagtccatcagcgatcgcccggatgcggaaatgctgcaaaccatgctgcta
cgctccatgaaacaggcgatttacgatccggaaaaccgtggtcacttcggcctggcgctg
cagtcttatgcgcactttacctcgccgattcgtcgttacccggatctgtcactgcaccgc
gccattaaatatctgctggcgcaagagcaggggcataagggcaacaccaccgaaacgggc
ggctaccactattccatggaagagatgctccagcttggtcagcactgttccatggccgaa
cgtcgcgccgacgaagcaacacgtgatgtggcggactggctgaagtgtgacttcatgctg
gatcaggtgggcaatgtctttaaaggcgtcattgccagcgtcaccggctttggcttcttt
gtgcgtctcgacgagctgtttatcgacggcctggtccacgtctcctcgctcgataacgat
tactaccgctacgatcaggttggtcaacgcctgacgggtgaatccggcggccagacttac
cgtctgggcgatcgcgtggaagtgaaggtggaagccgttaacatggacgaacgtaagatt
gatttcagtctgatctcaagcgaacgtgctccgcgtaacgtcggtaaaaccgagcgcgaa
aaagcgaaaaaagggtcaaacggtaaaaccggcggcagacgtcgtcaggcgggcaaaaag
gtgaacttcgagccggatgccgcgttccgtggtgataaaggcaaagcagcgccaaaacca
ccaaaagcgaagaaagagaaaggcgcgaaaaaaccgtccgccaagacccagaaaatagcg
gccgcgaccaaagcgaagcgtgctgcgaagaaaaaagtggcggagtaa
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