Lelliottia sp. WB101: DAI21_07405
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Entry
DAI21_07405 CDS
T05398
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lew
Lelliottia sp. WB101
Pathway
lew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAI21_07405 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lew03019
]
DAI21_07405 (pnp)
03016 Transfer RNA biogenesis [BR:
lew03016
]
DAI21_07405 (pnp)
Enzymes [BR:
lew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DAI21_07405 (pnp)
Messenger RNA biogenesis [BR:
lew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAI21_07405 (pnp)
Transfer RNA biogenesis [BR:
lew03016
]
Prokaryotic type
tRNA degradation factors
DAI21_07405 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
aRib
S1_2
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
KH_SLS1_2
DUF4172
Motif
Other DBs
NCBI-ProteinID:
AVY97507
LinkDB
All DBs
Position
1550019..1552154
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AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAEARLSDAYRITDKQERYAQIDVIKSETIATLVAEDESLDANELSEILHAI
EKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMNQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaaattccagtatggtcagcataccgtcacgctggaaacc
ggcatgatggcacgtcaggctactgctgccgttatggtaagcatggatgacaccgctgta
ttcgtgaccgttgtaggccagaaaaaagcaaaaccaggtcaggacttcttccctctgacc
gtgaactatcaggagcgtacctacgctgctggtaaaatcccgggtggcttcttccgtcgt
gaaggtcgtccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggcttcgtaaacgaagttcaggttatcgcgaccgttgtttccgtt
aacccacaggttaacccggacatcgtggcgatgatcggtgcatccgctgcactctccctg
tcaggcattccattcaacggtcctatcggttctgctcgcgttggttatatcaacgaccag
tacgtactgaacccgactcaggatgagctgaaagaaagtaagctggacctggttgttgcc
ggtaccgaagctgccgtactgatggttgaatccgaagcagaactgctgagcgaagaccag
atgctgggcgccgtggtattcggccacgagcagcagcagattgttatccagaacatcaac
gatctggtgaaagaagccggtaaaccacgttgggactggcagccagaagccgttaacgaa
gcgctgaacgcgcgcgttgctgcactggcagaagcgcgtctgagcgatgcataccgcatc
actgacaaacaagagcgttacgcgcagattgatgtcatcaaatctgaaactatcgctacg
ctggttgcagaagatgaatccctggacgcgaacgagctgagcgaaatcctgcacgctatc
gagaaaaatgctgtacgtagccgcgttctggctggcgaaccgcgtatcgatggccgcgaa
aaagacatgatccgtggtctggatgtgcgtactggcgttctgccacgtactcacggttcc
gcactgttcacccgtggcgaaactcaggcgctggtaaccgcgactctgggtactgcacgt
gacgcacagaacatcgacgaactgatgggcgagcgcactgacagcttcctgttccactat
aacttccctccgtactccgtaggtgaaaccggtatggttggctcgcctaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtgctggcagttatgccggaagctgacaaa
ttcccgtacaccgttcgtgtggtttctgaaatcaccgaatctaacggttcttcttccatg
gcttccgtgtgtggcgcttccctggctctgatggatgcaggcgtgccaatcaaagctgct
gttgcgggtatcgcaatgggcctggtgaaagaaggcgacaactttgttgttctgtctgac
attctgggcgacgaagatcacctgggcgatatggacttcaaagtagcgggttcccgcgaa
ggtatctctgcactgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgcactgaaccaggctaaaggtgcgcgtctgcacatcctgggcgtgatggagcaggcg
atcaacgcgccacgcggcgacatttctcagttcgcaccgcgtatccacaccattaagatc
agcccagacaagatcaaagatgtgatcggtaaaggtggttctgttatccgtgctctgact
gaagagaccggcaccactatcgaaatcgaagatgacggtactgtgaagatcgcagcgacc
gacggcgaaaaagcgaaattcgcgattcgtcgtatcgaagagatcactgcagaaatcgaa
gtgggtcgcatctacaatggtaaagtgacccgtatcgttgactttggcgcgttcgttgcc
atcggtggcggtaaagaaggtctggtacacatctctcagatcgctgacaagcgcgttgag
aaagtgaccgactacctgcagatgaaccaggaagtcccggttaaagttctggaagttgac
cgccagggccgtatccgtctgagcattaaagaagcgaccgagcagtctcagcctgctgcc
gcgccggaagccccggccgcagaacaaggcgagtaa
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