Lelliottia sp. WB101: DAI21_07420
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Entry
DAI21_07420 CDS
T05398
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lew
Lelliottia sp. WB101
Pathway
lew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAI21_07420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lew03019
]
DAI21_07420
03009 Ribosome biogenesis [BR:
lew03009
]
DAI21_07420
Enzymes [BR:
lew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAI21_07420
Messenger RNA biogenesis [BR:
lew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DAI21_07420
Ribosome biogenesis [BR:
lew03009
]
Prokaryotic type
rRNA helicases
DAI21_07420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVY97510
UniProt:
A0AAD0IHS8
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All DBs
Position
1553331..1555250
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AA seq
639 aa
AA seq
DB search
MAEFETTFADLGLKATILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLHNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEAELPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTVEGEELD
IETLAAALLKMAQGERALIVPPDAPMRPKREFRERDERFERRGNDRNDRGPRGDRPERSG
EDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIE
LPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQPRPDRGPRREGDRPAGERRFGGGERREG
GRGPRRDGAAPAGAGRFSGERRENRGPRRDEGTARRRDA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggccactatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggctgaatgcatcccgcatctg
ctctctggtcgtgacgtgctgggcatggcccagactggtagcggtaaaaccgcagcgttc
tcgctgccactgctgcacaacattgatccggaactgcgtgcaccgcagatcctcgtactc
gctccgacccgtgaactggctgttcaggtagcggaagcgatgactgaattctctaaacac
atgcgcggcgtgaacgtggtagccctttacggcggccagcgttatgacgtgcagctacgc
gccctgcgtcagggtccacagattgttgtcggtacacctggccgtctgctggatcacctg
aaacgcggtactctggatctctctaaactgagcggtctggtactggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaaccattatggcgcagatcccagaaggt
catcagaccgctctgttctctgcaacgatgccagaagcgatccgtcgtattactcgtcgc
ttcatgaaagatccgcaggaagtgcgtatccagtccagcgtaaccactcgcccggacatc
agccagagctactggtctgtatacggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggctgaagccctggaacgtagcggctataacagcgcagcgctgaacggcgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctgatt
gcaaccgacgtggcagcacgtggtctggacgttgaacgtatcagcctggttgtgaactac
gacatccctatggattccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgctggccgtgctctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgaccattccagaagcagaactgccaaacgcagacctgctgggc
aaacgccgcctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgctctgctggcgcaaatccagccgactgtggaaggcgaagagctggac
atcgaaactctggctgcagcgctgctgaaaatggcacagggcgaacgcgctctgatcgtg
ccacctgatgcaccgatgcgtcctaagcgtgaattccgtgagcgcgatgagcgtttcgag
cgtcgcggtaacgatcgtaatgaccgtggcccacgtggcgaccgtccagagcgtagcggt
gaagaccgtccacgtcgtgagcgtcgtgacgcaggcgatatggaactgtaccgcattgaa
gttggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgcgaacgaaggc
gacatcagcagccgttatatcggtaacatcaagctgttcggtacgcactctacgatcgaa
ctgccaaaaggcatgccgggcgaagttctgcagcactttactcgcacccgcatcctgaac
aaaccgatgaacatgcagctgatgggcgatgcccagccgcgtcctgatcgtggtcctcgc
cgcgaaggtgatcgtccagcgggcgagcgtcgtttcggtggcggtgagcgtcgtgaaggc
ggtcgtggtcctcgtcgtgatggcgcagcaccagccggtgcaggtcgcttcagcggtgag
cgtcgcgaaaaccgcggcccacgtcgcgatgaaggtactgcacgtcgtcgtgacgcgtaa
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