Lelliottia sp. WB101: DAI21_19840
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Entry
DAI21_19840 CDS
T05398
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lew
Lelliottia sp. WB101
Pathway
lew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAI21_19840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lew03019
]
DAI21_19840
Enzymes [BR:
lew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAI21_19840
Messenger RNA biogenesis [BR:
lew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DAI21_19840
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
DUF6482
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AVY99747
LinkDB
All DBs
Position
complement(4090616..4092007)
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AA seq
463 aa
AA seq
DB search
MSFDTLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QRLVQKEPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMM
KLRSGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDI
ERLLKKEIPRIALEGYEVDASIKAEPIQNGRQQRGGGGRGQGGGGRSQQPRRSEGGAPKA
AGKPPRRTGDAKPAGENPWRSGEAKPAGEGQRRRRPRKPASAQ
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgatacccttggcctgaacccggaaattctgcgcgctgttgcagagcagggc
tacgttgagccaacccctattcagcagcaggcgatccctgcggtgctggaaggccgtgac
ctgatggccagtgcccagaccggcaccggtaaaacggctggctttaccctgccactgctg
cagcgtctggttcagaaagagcctcacgcgaagggccgtcgcccggtccgtgcgctgatc
ctgacccccacccgtgaactcgctgcgcaaatcggcgaaaacgtccgggaatacagccgt
tacctcgacatccgttcgctggtggttttcggtggtgtgagcattaatccacagatgatg
aaactgcgtagcggcgttgacgttttagtcgccacgccgggccgtctgctggatctggaa
catcaaaacgcggtcaaactggatcaggttgaaatcctggtgctggatgaagcagaccgt
atgctggatatgggctttatccacgatattcgtcgcgtgctggcgaaactgcctgcacgt
cgtcagaacctgctgttctccgcgaccttctccgacgagatcaaagggctggcggaaaaa
ctgctgcgtaatccgctggaaatcgaagtggcgcgtcgcaacaccgcctctgagcaggtg
acccagcacgttcacttcgtcgacaagaagcgtaagcgggaactgctgtcccagatgatt
ggcgaaggtaactggcagcaggtgctggtctttacccgtaccaaacacggtgccaaccac
ctggcggaacagctgaataaagatggcattcgcagtgcagccatccacggcaacaagagc
cagggggcgcgtacccgtgcgctggccgatttcaaatcgggcgacattcgcgttctggtg
gcaacggatatcgcggcgcgtggcctcgacatcgaagagctgccacacgtcgtgaactat
gagctgccaaacgttccggaagattatgttcaccgtattggccgtactggccgtgcggcg
gcaaccggtgaagcgctgtctctggtttgcgtcgatgaacacaaactgctgcatgacatc
gaacgtctgctgaaaaaagagatcccacgtatcgccctcgaaggctatgaagtggatgct
tccatcaaagcggagccgattcagaacggtcgccagcagcgtggcggcggtggtcgagga
cagggcggtggtggccgaagccagcagccgcgccgttcagaaggtggcgcaccaaaagcg
gcaggcaaaccgccgcgccgtacgggtgacgcgaaacccgccggggaaaacccatggcgc
agcggggaagcaaaacccgcaggcgaaggccaacgccgacgccgcccgcgtaaacctgcc
tccgcgcagtaa
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