Lentibacillus sp. CBA3610: Len3610_18000
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Entry
Len3610_18000 CDS
T08606
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lex
Lentibacillus sp. CBA3610
Pathway
lex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Len3610_18000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lex03019
]
Len3610_18000
03009 Ribosome biogenesis [BR:
lex03009
]
Len3610_18000
Enzymes [BR:
lex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Len3610_18000
Messenger RNA biogenesis [BR:
lex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Len3610_18000
Ribosome biogenesis [BR:
lex03009
]
Prokaryotic type
rRNA helicases
Len3610_18000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Stimulus_sens_1
Helicase_RecD
AAA_22
AAA_19
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
QKY71201
UniProt:
A0A7H8S9R8
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All DBs
Position
3621346..3622833
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AA seq
495 aa
AA seq
DB search
MTTFNELNISQPIMKALQEMGFEEATPIQAETIPLALQGNDVIGQAQTGTGKTAAFGIPM
IEHIDPKQRKIQGLVVAPTRELAIQVAEEVNRLGKIKGVRAMSVYGGQQMGRQIRALKDG
PHIVVATPGRLLDHMRRKTIRTSDVQTTVLDEADEMLNMGFIEDIRDILKNIPEERQTLL
FSATMPKEIRDIATNLMKNPKEVKMKAKKMTVENIDQFFIEIPEKQKFDTLTNHLDFYAP
GLAIVFSRTKKRVDEITDGLQARGFRAEGIHGDLTQGKRMSVLNKFKNNRVDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGRTGEAISFITPRETAHLNLIEKVTK
SKMKRMAPPTYQEAKRGQQQAAADKLRKKIDQQDLQDYQETASELLEDYDSMTVVAAALK
MMTKERRNAPVKISSVQPISVKKAQGGKKHHKGRPQNKKFYGNRGQSGRKQGGRNQGGRN
RQGNYQKRRNHNSNN
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacatttaatgaactgaatatttcacagccgattatgaaagctttgcaggagatg
ggctttgaagaagcaaccccgatccaggcggaaacgataccgcttgctttacagggaaat
gacgtgatcggacaagcacagacaggaacaggaaagactgctgcatttggtattccaatg
attgaacacatcgatccgaaacaacggaaaattcaaggactggtcgtggcacctaccaga
gaattggccattcaggtggctgaggaagtcaatcggcttggcaaaataaaaggcgtacgc
gcaatgtcggtttacggcgggcagcaaatggggcggcaaatccgcgcattgaaagatggg
ccgcatattgttgtggcaacaccgggaaggttacttgatcacatgcggcgtaaaacaatc
agaacgtcagatgtacagacgacagttcttgatgaagctgatgaaatgctgaatatggga
ttcattgaagatattcgtgacattttgaaaaatattccggaagaacggcagacattgcta
ttttccgcaacaatgccaaaggaaatccgtgatattgccacgaacctgatgaaaaaccct
aaagaagtcaaaatgaaagcaaaaaaaatgacggttgagaatatcgatcaattttttatt
gagatccctgagaaacaaaaattcgatacgttgacaaatcatttggatttttatgctccg
ggacttgcaatcgtcttcagccggacgaaaaagcgggtggatgaaatcaccgacgggctt
caggcacgcgggtttcgtgcagaaggtattcacggggacctgactcaagggaagcggatg
tcggttctgaataaatttaaaaacaatcgtgttgatgtactggtggcgactgatgtagcg
gcacggggacttgatatttcaggtgtgacacatgtttataatttcgatataccacaggat
ccggaaagttatgtacaccggattggccgtacaggaagagcaggacgcaccggagaagcg
atatcattcattacaccacgggagaccgcacatttaaatttgattgaaaaagtgacaaaa
agtaaaatgaagcggatggcgcctccgacttatcaggaagcgaaacgcggccagcagcag
gcagcagcagataaactgcggaaaaagattgatcagcaggatttgcaggactatcaggaa
actgccagtgagcttctggaggattatgattcgatgacagttgttgcagctgcccttaaa
atgatgacgaaagagcggcgtaatgcacctgtcaaaatctcgtccgttcaaccgatcagc
gtgaaaaaagcgcagggcggcaagaagcatcataaaggcagaccgcaaaataagaaattt
tacggaaaccgggggcaaagcggacgcaagcaaggaggccgcaatcaaggcggacgtaat
cgccagggaaattatcagaagcggcgcaaccacaactcgaataactaa
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