Lentibacillus sp. CBA3610: Len3610_19805
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Entry
Len3610_19805 CDS
T08606
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lex
Lentibacillus sp. CBA3610
Brite
KEGG Orthology (KO) [BR:
lex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lex03009
]
Len3610_19805 (rlmD)
Enzymes [BR:
lex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Len3610_19805 (rlmD)
Ribosome biogenesis [BR:
lex03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Len3610_19805 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltransf_15
Methyltransf_11
PrmA
N6_N4_Mtase
RrnaAD
DUF7188
Methyltransf_32
FtsJ
Methyltransf_12
AIG1
DOT1
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QKY71487
UniProt:
A0A7H8SB30
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All DBs
Position
3975843..3977228
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AA seq
461 aa
AA seq
DB search
MAKQTAPVTKNQTITLTFEDLTHEGSGVGKVNGYPLFVPYALPGEEGEVKVVKVNKNFGF
GKLLNVTKSSEERVEPPCDVYYKCGGCQLQHMSYDMQLDMKQEQVGNAMRKIAHLEDVPV
HPIIRMEDPWRYRNKVQMPVGEKEDGELKTGFYQKRSHRIIEGMETCNIQDEVNDRMVEA
VRRIADRFDIPAYDEQNDTGVLRHIVVRTGEVTKDTMIVIITRTPDLPHQDDLVKELIKT
YPHIKSIVHNINDRKTNSIWGRKSKAIWGEDYIYDKIGDIKFAISAKSFYQVNPPQTKKL
YDKALEYARIGSNDTVVDAYCGIGTISLFLAQEAKKVYGVEVVPEAVDDARKNARLNGFT
NAEFYVGEAEKVMPWWTAQGMRPDVVIVDPPRKGCDEELLKAMLGMEPKRIVYVSCNPST
LARDLRILEDGGYATQEVQPVDMFPQTHHVEAVSWLERKTV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacaaacagcaccggtgacaaagaaccaaacgatcacactcacctttgaagac
ctgactcacgaggggagcggcgtcgggaaagtcaatggctatccattatttgtcccttat
gcgctcccgggcgaagaaggcgaagtgaaggtcgttaaagtcaataaaaattttggattc
gggaaactgctcaatgtgaccaaatccagtgaagagcgcgttgaaccgccgtgtgatgtg
tattataaatgcggcggatgccagctgcagcatatgagctatgacatgcagctcgatatg
aaacaggaacaggtaggtaacgcaatgcggaaaatcgcccacctggaagacgtgccggtt
cacccgattattcgcatggaagatccttggcgttaccgcaataaagtgcagatgcctgtc
ggggaaaaagaagacggtgaactgaaaaccggattctaccaaaagcgcagtcaccggatt
attgagggaatggagacgtgtaatattcaggatgaagtgaatgaccggatggtagaggca
gtgcggcggatagctgaccggtttgacattcccgcttatgatgaacagaatgataccggt
gtgttaaggcacattgtcgttcgcacgggtgaggtgacaaaggatacgatgattgtcatc
attacccggacacctgacctcccgcatcaggatgatctggttaaggaactgatcaagact
tatccgcatatcaaatcgattgtccataatattaatgaccggaagacaaattccatttgg
ggcagaaaatcgaaggccatctggggagaagactatatttatgacaaaatcggtgacatt
aaatttgctatttctgccaaatctttttatcaggttaatccaccccaaacgaagaagcta
tatgacaaagcgttagaatatgcccgaattggcagcaatgatacagttgttgacgcttat
tgcggaattggcactatttcgctgtttctggcacaggaggccaaaaaagtctacggtgtg
gaagttgtcccggaagccgttgatgatgccaggaaaaatgccagactgaacggtttcacc
aatgccgagttttacgttggcgaagcggaaaaagtcatgccgtggtggacagctcaaggt
atgcgtccggacgtagttattgtggatccgccgcggaaaggctgtgacgaggagttgtta
aaggcgatgcttggtatggaaccgaagcggattgtttacgtatcttgcaacccctcaacg
ttggcacgcgatctgcgcattctggaagacggcggttacgctacacaggaagtccagccg
gtggatatgtttccgcagacgcatcatgttgaggcagtgtcctggttggagaggaaaact
gtctga
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