Leclercia sp. W6: DVA43_04485
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Entry
DVA43_04485 CDS
T08905
Symbol
nirD
Name
(GenBank) nitrite reductase (NAD(P)H) small subunit
KO
K00361
nitrite reductase [NAD(P)H] [EC:
1.7.1.4
]
Organism
ley
Leclercia sp. W6
Pathway
ley00910
Nitrogen metabolism
ley01100
Metabolic pathways
ley01120
Microbial metabolism in diverse environments
ley01310
Nitrogen cycle
Module
ley_M00531
Assimilatory nitrate reduction, nitrate => ammonia
ley_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
ley00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
DVA43_04485 (nirD)
Enzymes [BR:
ley01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
DVA43_04485 (nirD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox
Rieske_2
Rubredoxin_C
NIR_SIR
Pyr_redox_3
Fer2_BFD
NIR_SIR_ferr
DAO
GIDA
AlaDh_PNT_C
NAD_binding_8
FAD_binding_2
FAD_oxidored
Amino_oxidase
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
AXF58854
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All DBs
Position
898561..902541
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AA seq
1326 aa
AA seq
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MRLVIIGNGLAATRLVESLTERAPGRFEITLIGEERVHAYNRIQLSPVLGGEKEAAATQL
HDESWYRTRGITVVCGERVRAVDFSARTLRTDSRQFVWDELVFATGSQPFVPPIPGSHLP
HVFTFRTLEDVAAILATPGPAVVLGGGVLGVEAAAALRQRGDNVTLVHRGPWLMEQQLDQ
QAGLLLEQALCERGIGCELNAGLSQIAPDSVTLSDGRTLAATRVVLATGVLPNIALAQAS
GVPCGRGILVDNQMRTDITGISAIGECCELNGETWGLVAPCLAQAEILAARLAGECVAPF
IPTQNGMRLKVTGIELFSAGEVIAQEKDAVWTSWDPLTRHYRRLLVRNGTLAGVLLMGEC
RSAATLTDLLATSETAQADWLFDRFTTQPQVAGQNAMTKPTLVVVGHGMVGHHFLEDCVN
RGLHQQYQIVVFGEERYAAYDRVHLSEYFAGRSADSLSMVAGDFFADHGIELRLSQPVVA
IDRDARVIRTGAGHETHWDKLVLATGSYPFVPPVPGRDLPGCFVYRTLDDLDNIAAHAKN
SRTGVVIGGGLLGLEAANALKQLGLDTHVVEFAPNLMAVQLDNDGAAMLRRKIEALGVGV
HTSKATTEIAETDSGMVLRFADGSELATDMVVFSAGIRPQDALARSCGLVLGERGGIAID
NQCRTSDKDIFAIGECALWEGKIYGLVAPGYQMARVASAALAGEANAFTGADMSTKLKLL
GVDVASFGDAHARTPGAQSYQWTHGPQQIYKKIVVSADNKTLLGGVLVGDASEYATLVQM
MLNDIRLPKDPETLILPAVAGSAPKALGVAALPESAQICSCHNVSKGDICQAVSNGATDI
GAVKQCTKAATGCGGCSALVKQVMEFQLAAQGVEVKKDICEHFAYSRQEIYHLVRVNRIH
TFEQLISRYGQGHGCEICKPLVGSVLASCWNEYLLKPAHLPLQDTNDRYFANIQKDGTYS
IVPRMAAGEVTADGLIAIGQIAKRYQLYSKITGGQRIDLFGARLEQLPEIWQQLIDAGFE
TGHAYGKSLRTVKSCVGSTWCRYGVQDSTGLAVTLENRYKGLRAPHKIKMAVSGCTRECA
EAQSKDVGVIATDKGWNLYLCGNGGMKPRHADLFASDLDDATLLRYVDRFLMFYIRTADR
LQRTSTWRDNLEGGLEYLREVIIDDSLGIAAELEQEMQRVVDTYQCEWQTTLQDPGRLAQ
FRTLDAAPVSTKRWQDICTLDEIPEQAGIGARLGTQPIALFRFGKAIYALEDREPGGSAS
VLSRGILGDAGGEPVVISPLYKTRIRLRDGRHVETGEVAVRAWPVRVDGDRVQVGSEELV
MRAEAS
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctggtcattattggaaacggactggcggcaacacggctggttgagtctttgacc
gagcgcgcgccaggccgctttgagatcaccctcatcggcgaggagcgcgtacacgcctac
aaccgcatacagctttcgccggtgctggggggcgagaaagaggcggcggcgacacagctt
catgatgagagctggtatcggacgcgcggcatcaccgtggtgtgcggcgagcgggtgcgg
gcagtggattttagcgcccgaacgctgcgtaccgacagccgacagttcgtatgggatgaa
ctggtctttgccaccggttcccagccgttcgtgccgcccatccctggcagccatctgccc
cacgtctttacctttcgcactctggaggatgtggccgccattctggcgacgcccggcccg
gcggtggtgctggggggtggcgtactcggcgtggaagccgccgcagcgttaagacagcgt
ggtgacaacgtcacgttagtccaccgcggtccgtggctgatggagcagcagctcgatcag
caggcgggtctgctgctggagcaggcgctttgcgagcggggtatcggctgtgaactgaac
gccgggttgtcgcagatcgccccggacagcgtcaccctcagcgacgggcgcaccctggcc
gccacccgggtggtactggcgacgggcgtgttgcccaatatcgccctggcgcaggccagt
ggtgtgccctgcggccgggggatcctggtggataaccagatgcgcactgacattacgggc
atcagcgccatcggcgagtgctgtgaattaaacggcgagacctgggggctggtggcgccg
tgcctcgcccaggcggagatcctcgccgcccgtctcgccggggagtgcgtcgcccccttt
atccccacgcaaaacggcatgcgcctgaaggtgaccggtattgagctgttcagcgctggt
gaggttatcgcgcaggaaaaagatgcggtgtggaccagctgggacccgctgacccgccac
tatcgccgtctactggttcgcaacggtacgctggcaggcgtgctgctgatgggggagtgt
cgcagcgcggccaccctcaccgatttactggcaacgtcagaaaccgctcaggcggactgg
ctgttcgatcgattcactacgcagccgcaggttgcaggacagaacgctatgacaaaacct
actctggttgtggttgggcacggtatggtcggccaccattttcttgaagactgcgtcaat
cgcggtttgcatcagcagtatcagattgtggtcttcggcgaagagcgctatgccgcctac
gatcgcgtccatctgtcggaatattttgccggacgcagcgccgactcgctgtcgatggtg
gccggagatttctttgccgatcacggcattgagctgcgactctcccagccggtggtcgcc
atcgatcgcgacgcccgggtgattcgcacgggagcagggcacgaaacccactgggacaag
ctggtgctggcgaccggttcgtatccgtttgtgccgccggtaccgggccgggatctgccg
ggctgttttgtctaccgtactctcgacgacctggataacatcgccgcccatgcaaaaaat
tcgcgcaccggggtggtgattggcggcggcctgctggggctggaggcggccaacgccctg
aaacagcttgggctggatacgcacgtggtggagtttgccccgaacctgatggcggtgcag
ctcgataacgacggcgccgcgatgctgcgccgtaaaattgaagccctcggtgtgggggtg
cataccagtaaggccaccaccgagattgcagaaaccgacagcgggatggtgctgcgcttc
gccgacggcagcgagctggcgaccgacatggtggtcttctccgccgggatccgcccgcag
gatgcgctggcccggagctgcggcctggtgctgggcgagcgcggggggattgccatcgac
aaccagtgccgcacctccgacaaggacatcttcgctatcggagagtgcgccctctgggaa
ggcaaaatctacggtctggtggccccgggctatcagatggcgcgggtggcgagcgccgcg
ctggccggggaggcgaacgccttcactggcgccgacatgagtaccaaactcaagctgctg
ggcgtggacgtggcctcgtttggcgatgctcacgcgcgcacgccgggggcgcagagctac
cagtggacccacggcccgcagcagatctacaagaagatcgtggtcagtgccgacaataaa
accctgctcggcggggtgctggtgggggatgccagcgaatacgcgaccctggtgcagatg
atgctcaacgacattcgcctgcctaaggatcctgaaaccctgatcctgcctgcggtggcg
ggcagcgccccgaaagcgctgggcgtggcggctctgccggaaagcgcgcagatctgctcc
tgccacaacgtcagcaaaggcgatatctgccaggcggtcagcaacggcgccaccgacatt
ggggcggtaaaacagtgcaccaaagcggccaccggctgcggtggatgcagcgccctggtg
aaacaggtgatggagttccagctggcggcccagggcgtggaggtgaaaaaggacatctgc
gagcatttcgcgtactcgcggcaggagatctaccacctggtacgcgtcaaccgcatccac
acctttgaacagctcatcagccgctacggccaggggcatgggtgtgagatctgtaagccg
ctggtgggatcggtgctggcctcatgctggaacgaatacctgctgaaaccggcccacctg
ccgctgcaggacaccaacgaccgctactttgccaatatccagaaagatggcacctactcc
attgtgccgcgcatggccgctggcgaagtgaccgccgacgggctgatcgccatcgggcag
atcgccaaacgctaccagctctacagcaaaatcaccggcggacagcgtatcgacctgttt
ggtgcccggctggaacagctcccggagatctggcagcagctgatcgacgccgggtttgaa
accgggcacgcctacggcaaatccctgcgcacggtgaaatcctgcgtcggatctacctgg
tgccgctacggggtgcaggactcgaccgggctggcggtgacgctggagaaccgttacaag
gggctgcgcgccccgcacaagatcaagatggccgtttccggctgcacccgtgagtgtgcc
gaagcccagagcaaggatgtgggggtgatcgccaccgacaaggggtggaacctctatctg
tgcggcaacggcggcatgaagccgcgccacgcggatctgttcgccagcgatctcgacgac
gccacgctcctgcgctacgtcgaccgcttcctgatgttctatatccgcaccgccgatcgc
ctgcagcgcaccagcacctggcgggataacctcgagggcgggctggaatacctgcgcgag
gtgatcatcgacgacagcctcggcattgccgccgagctggagcaggagatgcagcgggtg
gtggatacctatcagtgcgaatggcagaccactttgcaggacccgggccgtctggcgcag
ttccgtaccctcgacgccgcgccagtatccacaaaacgctggcaggatatctgtaccctg
gacgagatcccagaacaggcgggcattggcgcccgtctgggtacgcagcccattgcgctg
ttccgctttggcaaggcgatttatgcccttgaggatcgcgagccgggcggcagcgccagc
gtactgtcgcgcggcattctcggggatgccggaggcgagccggtggtgatttccccgctg
tataaaacgcggatccgcctgcgcgacgggcgccatgttgaaaccggggaagtggcggtg
cgcgcctggccagtcagagtcgatggcgaccgggtgcaggtgggcagtgaagagctggtg
atgcgcgcggaggcctcatga
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