Leclercia sp. W6: DVA43_08975
Help
Entry
DVA43_08975 CDS
T08905
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ley
Leclercia sp. W6
Pathway
ley03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ley00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVA43_08975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ley03400
]
DVA43_08975
Enzymes [BR:
ley01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVA43_08975
DNA repair and recombination proteins [BR:
ley03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVA43_08975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXF59672
UniProt:
A0AAD0LSA7
LinkDB
All DBs
Position
1820548..1823994
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQNRFSLPVKAGDQRQLGELTGAACATLVAEIAERHQGPVVLVAPDMQNALRLHDEIR
QFTDQLVTSLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDGLRVQLDSAGYRHVDQVMEHGEYATRGALLDLYPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPSGIEYWQPLFFSEPLPALFSYFPANTLVLNTGDLETSASRFESETR
ARFENRGVDPMRPLLEPELLWLRTDELFSELKRWPRMQLKTDSLPEKAANTNLAYQPLPD
LAVQAQNKSPLDNLRKFLESFTGPVIFSVESEGRREALGELLGRIKVAPKRILRLDEASG
TGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDNRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYAGMTTLEAGGIKGEYLMLLYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRATFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMMSRFRSAKEQAQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLMTPHPKAMTPDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKDEASLEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGMIEFAEKNHVDPMWLIGLLQKQPQHFRLDGPTRLKFTQDLAERKTRMDWVRNFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaaaatcgtttttccctgcccgtcaaagcgggcgaccaacgccagttaggt
gaactgaccggggcagcctgcgccacgctggtggcggaaattgcagagcgtcatcagggc
ccggtggtactggtcgcgccggacatgcaaaacgccctgcgtctgcatgatgagatccgt
cagttcaccgatcagctggtcaccagccttgccgactgggagacgctgccttacgacagc
ttctccccgcaccaggagatcatctcctcgcgcctctccacactgtatcagctgccctcc
atgcagcgcggcgtgctgattgtgccggtcaataccctgatgcagcgcgtctgcccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctctcaagggatggc
ctgcgcgtgcagctcgacagcgcgggctatcgccatgtcgatcaggtcatggagcacggg
gagtacgccacccgcggcgcgctgctcgacctctaccctatgggcagtgaacaaccttat
cgtctggactttttcgacgacgaaatcgacagcctgcgcctgtttgatgccgatacccag
cgcacgctggaggaagtggaggccatcaacctgctgccggcccacgaattcccgaccgac
aaaaccgctattgagctcttccgcagccagtggcgcgataagtttgacgtcaagcgcgac
gccgagcatatctaccagcaggtgagcaaaggcaccctgccgtcagggatcgaatactgg
cagccgctgttcttcagcgagccgctgcctgccctgttcagctatttcccggctaacacg
ctggtgctcaacaccggcgatctggagaccagcgccagccgtttcgagagtgaaactcgc
gcccgctttgaaaaccggggggttgatccgatgcgcccgctgctggagcccgagctgctg
tggctgcgcaccgatgagctgttcagcgagctgaaacgctggccgcgcatgcagcttaaa
accgacagcctgccggagaaagctgccaataccaacctggcctatcagccgctgccagac
ctcgcggtgcaggcgcagaacaaatcgccgctggataacctgcgtaagttcctcgaatcc
tttaccggcccggtgatcttctctgtggaaagcgaagggcgccgtgaggcgctgggcgag
ctgcttggccgcattaaggtcgcaccgaagcggatcctgcgcctggacgaggccagcggc
accgggcgctatctgatgattggcgccgccgagcatgggtttattgatacgctcaataat
ctggcgctaatctgcgaaagcgatctgctgggtgagcgcgtggcgcgccgccgtcaggac
aaccgccgcaccatcaacccggacacgctgatccgcaacctggcggagctgcatcccggc
cagccgattgtccatcttgagcatggcgtaggccgttacgcggggatgaccaccctggaa
gcgggcggcatcaagggtgaatatctgatgctgctgtacgccaacgatgccaaactctat
gtgccggtgtcgtccctgcacctgatcagtcgctacgcgggcggtgcggaagagaatgcc
ccgctgcacaagctcggcggcgatgcctgggcgcgggcgcggcagaaagcggcggagaaa
gtgcgcgatgtggcggcggagctgctggatatctatgcccagcgcgcggcgaaggcgggc
tacgccttcaaacatgataaagagcagtatcaactcttctgcgacagcttcccgtttgaa
accaccccggatcaggcccaggcaattaacgccgtgctgagcgacatgtgtcagccgctg
gcgatggatcgtctggtctgcggcgatgtgggcttcggtaaaaccgaagtggcgatgcgc
gccaccttcctggcggtggagaataacaagcaggtggcggtgctggtgcccaccaccctg
ctggcgcagcagcactacgataacttccgtgaccgctttgccaactggccggtgcgcatt
gagatgatgtcgcgtttccgcagcgccaaagagcaggcgcagatcctggagcaggcaagc
gagggcaagatcgacattctgatcggtacccataaactgctgcagagcgacgtgaagtgg
aaagatctggggctgctgattgtcgacgaagagcatcgcttcggcgtgcgccacaaggag
cgcatcaaagcgatgcgcgccgatgtcgatatcctgaccctcaccgccacgccgatcccg
cgcacgttaaatatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgcct
gcccgccgtctggcggtgaagacctttgtccgtgagtacgataacctggtggtgcgcgag
gcgatcctgcgtgaagtgctgcgcggcggccaggtttattatctctacaacgatgtcgag
aatatccagaaagcggcggaccgtctggcggagctggtgccggaagcgcgtattgccatc
ggccacgggcagatgcgcgagcgcgagctggaacgggtgatgaacgatttccatcaccag
cgctttaacgtgctggtctgcaccacgatcatcgaaaccggtatcgatatccctaccgcc
aataccatcattattgagcgagcggatcactttggcctggcccagctccaccagctgcgt
ggccgtgtcggacgttcacaccatcaggcctatgcctggctgatgactccacacccgaaa
gcgatgacccccgatgcgcagaagcgtctcgaagccatcgcctcgctggaagatctgggc
gccggttttgcgctggccactcacgacctggagatccgcggcgcgggcgaactgcttggg
gaagatcagagcggctcgatggaaaccatcggtttctcgctctacatggagctgctggag
aacgccgtcgatgccctgaaggcggggcgtgagccgtcgctggaagatctcaccagccag
caaacggaagtggaactgcggatgccgtccctgctgccggatgattttatcccggacgtt
aacacccgcctgtccttctacaaacgcattgccagcgccaaagacgaagcgagtctggaa
gagataaaagtggagctgattgaccgctttggcctgctgccggatgcagcgcgtaacctg
ctggatattgcccgtttacgccagcaggcgcagaagctggggatccgcaagctggagggg
aatgaaaaaggcggcatgattgagtttgccgagaagaaccacgtcgatccgatgtggctg
atcggcctgctgcaaaaacagccccagcacttccggctcgatggaccgacgcgcctgaaa
ttcacccaggatctggcggagcgcaaaacccgcatggactgggtacgtaactttatgcgt
cagcttgaagagaatgccgtagcctga
DBGET
integrated database retrieval system
