Leclercia sp. W6: DVA43_18955
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Entry
DVA43_18955 CDS
T08905
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ley
Leclercia sp. W6
Pathway
ley03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ley00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVA43_18955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ley03019
]
DVA43_18955
03400 DNA repair and recombination proteins [BR:
ley03400
]
DVA43_18955
Enzymes [BR:
ley01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVA43_18955
Messenger RNA biogenesis [BR:
ley03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVA43_18955
DNA repair and recombination proteins [BR:
ley03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DVA43_18955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXF61469
UniProt:
A0AAD0LRR1
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All DBs
Position
3878562..3880391
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AA seq
609 aa
AA seq
DB search
MVQAEVVNQESLAKQVLHETFGYHQFRPGQETIINTALEGRDCLVVMPTGGGKSLCYQVP
ALVLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQVRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPSVPFMAL
TATADDTTRQDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQESCGNCDICLDPPKQYDGLMDARKAL
STIGRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGRDQSHEHWVSVIRQLIHLG
FATQNIAQHSALQLTEAARPVLRGEVELQLAVPRVVALKPRVMQKSYGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR
SHTDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggtgcaggcggaagtcgttaatcaggagtcgctggctaaacaggttttgcatgaaacc
tttggctatcaccagttccgcccgggccaggaaaccatcatcaacacggcccttgagggg
cgtgactgtctggtggtcatgccgacaggcggcggtaaatcgctgtgctatcaggttccc
gcgctggtactgaatggcctgacggtggtggtgtcaccgctgatctcgctgatgaaagac
caggtcgaccagctgctggcgaacggcgtagcggcggcctgcctcaactctacccagacc
cgcgagcagcagcaggaggtgatggccgggtgccgcaccgggcaggttcgtctgctctat
atcgctccggaacgcctgatgctggataacttccttgagcatctggcgcactggaatccg
gtactgctggcggtagacgaagcgcactgtatctcccagtgggggcatgatttccgcccg
gagtatgccgccctcggtcagctgcgtcagcgcttcccgtcggtgccgtttatggccctt
accgctaccgccgacgacaccacccggcaggacatcgtgcgtctgctggggctcaacgat
ccgctgattcaggtcagcagcttcgaccgcccgaacatccgctacatgctgatggagaaa
tttaagcccctcgatcagctgctgcgctatgtgcaggagcagcgcggcaaatccggcatt
atctactgcaacagccgggcgaaggtggaagacaccgccgcccgtctgcaaagccgcggc
ttcagcgccgccgcctatcatgcggggctggaaaaccacatccgtgccgacgtgcaggag
aaattccagcgagacgacctgcaaattgtggtggcgactgtcgccttcgggatgggtatc
aacaagccgaacgtgcgctttgtggtgcatttcgacattccgcgcaatatcgaatcctac
taccaggagacgggccgcgccgggcgtgatggcttgcccgccgaggcgatgctcttctac
gatccggcggatatggcctggctgcgtcgctgcctggaagagaaaccccaggggcagttg
caggatatcgagcgccacaagctcaacgcgatgggcgcctttgccgaagcgcaaacctgc
cgccgtctggtgctgctgaactattttggcgaggggcgtcaggagtcgtgcggcaactgc
gatatctgcctcgacccgccgaagcagtacgacgggctgatggacgcgcgcaaggcgctc
tccaccattggccgcgtcaatcagcgcttcggcatgggctacgtggtggaagtgctgcgc
ggtgccaacaatcagcgtatccgcgagatgggccatgacaagctgccggtctacggtatt
ggccgcgatcagagccatgagcactgggtcagcgtgatacgtcagcttatccacctgggc
tttgccacccagaacattgcccagcactccgcgctgcagctcaccgaagccgcccgtccg
gtgctgcgcggcgaggtcgaattgcagcttgccgtgccgcgcgtggtggcgctgaaaccg
cgtgtgatgcagaaatcttacggcggcaactatgaccgtaaactgtttgccaagctgcgt
aagctgcgcaaagccattgcggatgaagagaatatcccgccttatgtagtgttcaacgat
gccacgctgattgagatggccgagcagatgccgctcagcgccagcgaaatgctcagcgtc
aatggcgtgggcacccgcaaactggagcgcttcggcaaagagtttatggcgcttattcgt
tctcataccgatggtgatgatgaggagtag
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