Leclercia sp. W6: DVA43_20890
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Entry
DVA43_20890 CDS
T08905
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ley
Leclercia sp. W6
Pathway
ley03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ley00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVA43_20890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ley03019
]
DVA43_20890
03009 Ribosome biogenesis [BR:
ley03009
]
DVA43_20890
Enzymes [BR:
ley01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DVA43_20890
Messenger RNA biogenesis [BR:
ley03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVA43_20890
Ribosome biogenesis [BR:
ley03009
]
Prokaryotic type
rRNA helicases
DVA43_20890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
DeaD_C
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXF61817
LinkDB
All DBs
Position
4257550..4259448
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AA seq
632 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEADLPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLTQIQPTAEGEELD
IETLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGRSFGGERREGGRGPRR
EGAAPGAGRFSGERRESRGPRREDGPVRRRDA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggcagaatgtatcccacatctg
ctctctggtcgtgacgtgctgggcatggcccagactggtagcggtaaaaccgcagcgttc
tcgctgccgctgctgaataacattgacccggacctgcgtgcaccgcagatcctcgtactg
gctccgacccgtgaactggctgttcaggtggcggaagctatgactgaattctctaaacac
atgcgcggcgtaaacgtggttgctctgtacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcagggtccacagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aaacgcggtacgctggatctctctaaactgagcggtctggtactggatgaagctgacgaa
atgctccgcatgggcttcatcgaagacgtagaaaccattatggcgcagatcccggaaggt
catcagaccgccctgttctctgccaccatgccggaagcgatccgtcgcattacccgccgc
ttcatgaaagagccgcaggaagtgcgcatccagtccagcgtgaccactcgcccggacatc
agccagagctactggtctgtgtacggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcgatcatcttcgttcgtaccaaaaatgcgaccctggaa
gtggcagaagccctggagcgtagcggctacaacagcgcagcgctgaacggcgacatgaac
caggcgctgcgtgagcagacgctggagcgtctgaaagacggtcgtctggatatcttgatt
gcaaccgacgtggcagcacgtggtctggacgttgaacgtatcagcctggttgttaactac
gacatcccgatggactccgagtcttatgttcaccgtatcggccgtaccggtcgtgcaggt
cgtgcgggccgtgcgctgctgtttgttgagaaccgcgagcgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgaccattccagaagcagacctgccaaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtccagcagcagctggagagcagcgatctg
gatcagtaccgtgcgctgctgacgcagatccagccgaccgccgaaggcgaagagctggat
atcgaaacgctggccgctgcactgctgaagatggcgcagggcgaacgttctctgatcgtg
ccgccagatgcaccgatgcgtcctaagcgtgagttccgtgaccgtgacgatcgtttcgaa
cgtcgtggcgaccgcaacgatcgtggcccacgtggcgaccgtccagagcgtggtggtgaa
gatcgtccacgtcgcgaacgtcgtgacgctggcgaaatggaactgtaccgcattgaagtg
ggccgtgatgatggtgttgaagttcgtcatatcgttggcgcgatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcggtacccactccaccatcgaactg
ccaaaaggtatgccgggcgaggttctgcagcactttacccgtacccgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgctcagccgcgtccggaccgtggcggcgaacgt
cgtggcggtggccgcagcttcggtggcgagcgtcgtgaaggcggtcgtggtcctcgtcgt
gaaggggctgcgccaggtgcaggtcgtttcagcggtgagcgtcgtgaaagccgtggccca
cgtcgtgaagatggccctgttcgtcgtcgtgacgcgtaa
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