Leclercia sp. W6: DVA43_23045
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Entry
DVA43_23045 CDS
T08905
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ley
Leclercia sp. W6
Pathway
ley03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ley00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DVA43_23045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ley03400
]
DVA43_23045
Enzymes [BR:
ley01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DVA43_23045
DNA repair and recombination proteins [BR:
ley03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DVA43_23045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AXF62203
LinkDB
All DBs
Position
4669010..4672555
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AA seq
1181 aa
AA seq
DB search
MTDTAESLNPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFSRPLNVEELL
VVTFTEAATEELRGRIRANIHELRIACLRQSTDNPLYASLLDEIDDKQQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESQLRYQACADFWRRHCYPLPRDIA
EAVHNLWKGPDELLRTIDRYLQGEAPVIKSAPPADETLASRHEKIVGLIAAMKQQWSDSV
AEIEAVIERSGIDRRKFNRGNQAKYIERVTAWAQEEKHSYQLPDALEKFSQSFLAERTKA
GGEVPEHPLFSAIDNLLAEPLTLNDLMITRALSEIREAVAREKRRRGELGFDDMLSRLDD
ALNSDNGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRQQPDTALLLIGDPKQAIY
AFRGADIFTYMKARGEVAAHYTLDTNWRSAPGMVESVNTLFSQMNDAFMFREIPFLPVKS
APRNATLRFEYKGDFQPAMRIWLMEGEGCGVGDYQTFMAQHCAAQIRDWLSAGVRGEAIL
HRGEDAQPVKASDITVLVRSRQEAALIRDALTLLGIPSVYLSNRDSVFETLEAQEMLWLL
QAVLAPERESTLRSALASAMLGLNAQDIDTLNNSETLWDEAVEEFTRYRERWQKRGVMAM
LRDLMTQRNIAENMLATAGGERRLTDILHISELLQEAGAQLESEYALVRWLAQHIAEPNS
NASSQQMRLESDKHLVKIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRKTFEAVLDL
SKADDSVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGEKSGDSDFHLSALGR
LIQRGEPKDAAGLRQCLEALCNEHIALQVAGVADAARWHMPDPVLPDLQARQVARMLYDD
WRVTSYSGLQQHGHSIAQDLMPRLDVDAAGTGEVPQEPELTPHQFPRGASPGTFLHSLFE
ALDFTQPISPEWVLEMLQKGGYDARWEPVLTRWIAQVLETPLNEEGISLSQLTAADKQVE
MEFYLPIAGPLTAGALDALIREYDPLSRGCPPLDFRQVRGMLKGFIDLVFRHNGRYYLLD
YKSNWLGENSEAYTPQAMARAMQSHRYDLQYQLYTLALHRYLRHRIADYDYQHHFGGVIY
LFLRGVDGSSPGAGCFATRPDEALIEQMDSLFSASNEELTQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccgctgagtcccttaaccccttacgtttaccattacagggggagcgactg
atagaggcctcagcgggaaccggaaaaaccttcaccatcgctgcactctatctgcgactg
ctgctcggtctgggcggcagcgcggcgtttagccgcccgctcaacgtggaagagctattg
gtggtaaccttcactgaagccgcgacggaagagctgcgcggacgtatccgcgccaacatt
catgagctgcgcatcgcctgcctgcgacagagtacagataacccgctgtatgccagcctg
ctggatgagattgacgataaacagcaggcggcacagtggctgctgctggcggaacggcag
atggatgaggctgccgtgtttactatccacggcttctgccagcgcatgctcagcctgaat
gcgtttgaatcaggcatgctttttgagcagcaacttatcgaagatgaatcccagctgcgc
taccaggcgtgcgccgacttctggcgtcgccattgctaccctctgccacgtgatatcgcc
gaagcggtacataatctctggaaaggcccggacgagctactgcggaccatcgatcgctat
ctgcagggggaagccccggtcatcaaatctgccccgcctgcggacgaaacgctggcttca
cgccatgagaagattgtcggcctgatcgccgccatgaaacagcagtggtctgacagcgtg
gcggaaatcgaggcggtgattgagcgctccggcatcgaccggcgtaaattcaaccgcggc
aaccaggcaaaatatatcgaacgcgtgacggcctgggctcaggaagagaagcacagctat
cagctgcctgacgcgctggaaaaattctcccagtcattccttgccgagcgcacgaaagcg
gggggcgaggtgccggaacacccgctcttttccgccatcgataacctgctggcagagccg
ttaacccttaacgatctaatgatcacccgtgcgctgtcagagatccgcgaagcggtggcg
cgggaaaagcgccgtcgcggtgagctgggcttcgacgatatgctcagtcgtctcgatgat
gccctcaacagcgacaatggcgaggcgctggctgccgccatccggacccgttttccggtg
gcgatgatcgatgaatttcaggataccgatccccagcagtaccggattttccgccgcatc
tggcgccagcagccggatacggctctgctgctgattggcgacccgaaacaggcgatctac
gccttccgtggggcggatattttcacctacatgaaagcgcgtggcgaagtggccgcgcac
tatacgctggataccaactggcgctcggcccccggcatggtggagagcgtgaacacgctc
ttttcacagatgaacgatgccttcatgttccgtgagatccccttcttaccggtcaaatct
gccccgagaaacgccacgctgcgtttcgagtataaaggcgatttccagcccgcgatgcgc
atctggctgatggagggcgaagggtgtggcgtcggagattaccagacctttatggcccag
cactgcgcggcgcaaatccgcgactggctgagcgctggcgtacgcggcgaagccattttg
caccggggcgaggatgcccaaccggtgaaggcgtcagacattacggtgctggtgcgcagc
cgtcaggaggcggcgttgatccgtgatgcgttgaccctgcttggcattccctcggtctat
ctctccaaccgcgacagcgtatttgaaacgctggaagcccaggagatgctctggctgttg
caggcggtgctggcgccggagcgtgaaagtaccctgcgcagcgccctggcaagcgccatg
ctcggccttaacgcccaggatatcgatacgctgaataacagtgagacactctgggatgag
gcggtagaagagtttacccgttaccgtgaacgctggcagaagcggggcgtaatggcgatg
ctgcgcgacctcatgacccagcgcaacatcgccgaaaatatgctggcaactgccggaggg
gaacgccgcctgaccgatattctgcacatcagcgaactgttgcaggaggcgggggcccag
cttgagagtgaatatgccctcgtgcgctggctggcgcagcacatcgccgagccgaacagc
aacgcctcaagccagcaaatgcgtctcgaaagtgacaagcatctggttaaaatcgtcacc
attcacaaatcgaaagggctggagtatccgctggtctggctgccctttattgccaactac
cgggttcaggatcaggccttttatcacgatcgtaaaaccttcgaagcggtgctcgacctc
agcaaggccgacgacagcgtggagctggccgaggctgaacggctggcggaagatttacgc
ctgctctatgtggcactgacccgttcggtgtggcactgcagcttaggcgtggcgccgctg
ttccgtcggcgtggcgaaaaatcgggtgacagcgatttccacctgagcgcgcttggacgc
ctgatccagcgcggcgagccgaaagatgccgccggtctgcgccagtgtctggaggcgttg
tgcaatgagcacattgcattgcaggttgccggtgtggcagacgccgcccgctggcatatg
ccggatccggtgttaccggatctgcaggcgcggcaggtggcccgcatgctgtatgacgac
tggcgggtcaccagctattccgggcttcagcagcacgggcacagtatcgcccaggatctg
atgccacgcctcgatgttgatgccgcaggcaccggcgaagtgccgcaggagccagagttg
acgccgcaccagtttccgcgcggcgcctcgccgggcacctttttacacagcctgtttgaa
gcactcgattttacgcagcccatctccccggagtgggtgctggagatgttgcaaaaaggg
gggtacgatgcccgctgggagccggtgttaacccgctggatcgcgcaggtgctggagact
ccgctcaatgaggaggggatctcactgagccagctgacagccgctgataagcaggttgag
atggagttttatctgcccatcgccgggccgctcaccgccggggcgctggatgcgttgatc
cgcgagtacgatccgctctcccggggctgcccgccgctcgattttcgtcaggtgcgcggc
atgctgaaaggctttatcgacctggtcttccgccataatggccgctattacctgctggac
tataaatccaactggctgggtgaaaacagcgaggcctataccccgcaggccatggcccga
gcgatgcagtcgcaccgctacgatctgcagtaccagctctacaccctggcgctgcaccga
tatttacgtcaccgtattgccgactatgactatcaacaccatttcggtggggtaatctac
ctgtttttacgtggcgtggatggcagctcgccgggcgccggttgctttgccacccgtcct
gatgaagcgttaatcgaacaaatggatagcctgttttccgccagcaacgaggagctaaca
caatga
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