Lysobacter enzymogenes C3: GLE_0368
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Entry
GLE_0368 CDS
T04371
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
lez
Lysobacter enzymogenes C3
Pathway
lez02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lez00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GLE_0368 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lez03021
]
GLE_0368 (rpoD)
Transcription machinery [BR:
lez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GLE_0368 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ALN55726
UniProt:
A0A0S2DB38
LinkDB
All DBs
Position
408352..410220
Genome browser
AA seq
622 aa
AA seq
DB search
MANERQPPPSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDAEQIEDIIGMINGMGIEVHE
VAPDAETLLLADGNTGNREVDDTAAEEAAAALTALDGEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLNQVQASLALYPGTIQLILDDYEQHKAGKKRLAEIVVGFNDHLDEE
PEPAAPPAPPADVADADSDEDEDEEAAGDGEETEETVSGPDPVEVAARMEAIADLHGKFL
KAHAKYGSAHKNATKLREDIAAVFITLKLPLALTDSLMRNLREVVGSIKERERKILDLAT
RVAKMPRKDFIRAWEGNQTNLEWVDELLKRKQKWSSGLRDVKDQIVAEQQATIELETRSL
LTLDELKEISRAVAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEFRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ
QYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPV
EATTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSEQLRSFLDID
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcagccccctccgtccgatatcaagctcctgatctccaagggcttg
gagcagggctatctgacctatgccgaggtcaacgatcacctgcccgacgatctggtcgac
gccgaacagatcgaagacatcatcggcatgatcaacggcatgggcatcgaggtgcacgaa
gttgcgcccgatgccgaaacgctgctgctcgccgacggcaacaccggtaaccgcgaagtc
gacgacaccgcggccgaagaagccgccgcggcgctgaccgcgctcgacggcgaaggcggc
cgcaccaccgatcccgtgcgcatgtacatgcgcgagatgggcacggtcgaactgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaggagggcctcaaccaggtccaggcc
tcgctcgcgctgtacccgggcacgatccagctgatcctcgacgattacgagcagcacaag
gccggcaagaagcgcctggccgagatcgtggtcggcttcaacgaccacctcgacgaagag
cccgagcccgccgctccgccggcgccgccggccgacgtcgccgacgcggactccgacgag
gacgaggacgaagaggccgccggcgacggcgaggagaccgaggagaccgtgtccggtccc
gatccggtcgaagtcgccgcgcgcatggaagccatcgccgacctgcacggcaagttcctc
aaggcccacgccaagtacggctcggcgcacaagaacgcgaccaagctgcgcgaggacatc
gccgcggtgttcatcaccctcaagctgccgctggcgctgaccgactcgctgatgcgcaac
ctgcgcgaagtggtcggctcgatcaaggagcgcgagcgcaagatcctcgacctggccacc
cgcgtggccaagatgccgcgcaaggacttcatccgcgcctgggaaggcaaccagaccaat
ctggagtgggtggacgagctgctcaagcgcaagcagaagtggtcgtcgggcctgcgcgac
gtcaaggaccagatcgtggccgaacagcaggccaccatcgagctggagacccgctcgctg
ctgaccctggacgagctcaaggaaatcagccgcgcggtcgcctacggcgaagccaaggcg
cgcaaggcgaagaaggagatggtcgaggccaacctgcgcctggtgatctccatcgccaag
aagtacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctg
atgaaggcggtggacaagttcgaattccgccgcggcttcaagttctcgacctacgccacg
tggtggatccgccaggccatcacccgttcgatcgccgatcaggcgcgcaccatccgcatc
ccggtgcacatgatcgagacgatcaacaagctcaaccgcatcagccgccagatgctgcag
cagtacggccgcgaagcgactccggaagagctggcgaaagaaatggacatgccggaggac
aagatccggaaggtcatgaagatcgccaaggagcccatctcgatggagactccgatcggc
gacgacgaggactcgcacctgggcgacttcatcgaggacaccaacgtggagtccccggtg
gaagcgaccaccaacatcaacctctccgagacggtccgcgacgtgctcgcgggcctgacc
ccgcgcgaggccaaggtgttgcgcatgcgcttcggcatcgacatgaacaccgatcacacc
ctggaagaagtcggcaagcagttcgacgtgacccgcgagcgcatccgccagatcgaagcc
aaggcgctgcgcaagctgcgtcatccgagccggtcggaacagctgcgcagcttcctcgat
atcgactga
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