KEGG   Lysobacter enzymogenes C3: GLE_3468
Entry
GLE_3468          CDS       T04371                                 
Name
(GenBank) DEAD/DEAH box helicase/helicase conserved C-terminal domain
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
lez  Lysobacter enzymogenes C3
Pathway
lez03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lez00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GLE_3468
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lez03019]
    GLE_3468
Enzymes [BR:lez01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GLE_3468
Messenger RNA biogenesis [BR:lez03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GLE_3468
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C Helicase_C_2 Cas3-like_C_2 AAA_22 Shikimate_DH HEM4 Sacchrp_dh_NADP
Other DBs
NCBI-ProteinID: ALN58813
UniProt: A0A0S2DKC4
LinkDB
Position
complement(3865808..3867154)
AA seq 448 aa
MTFESLGLAPALLRALSEQNYATPTPIQAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLL
HRLATAAPQGGPRKPRALILAPTRELALQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDA
LRRGVDVLVATPGRLIDHLERGSAKLDAVELLVMDEADRMLDMGFLPAIKRILGRLPASR
QTLLFSATFEAQIKQLALEFMRTPQQVQIAAKNVVADAISHRVHPVDGGRKRDLLIQILA
ARPNDQVIVFGRTKHGCNRLAEQLEDAGLKAVAIHGNKSQAQRQKALRDFKANKARVLVA
TDVAARGLDIPSLPLVINFDLPMVAEDYVHRIGRTGRNGATGEALSLVSPDEAGLLRQIQ
RILKDDIEMVSVAGFEPSRPLRMGSDAPGARRPGPGGNNRGNNAPRKPAHRPHGKPAPRH
AHAGPKQHRGGNGGGGQQQGQRRDRSAG
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgacgttcgaatccctgggcctggcgcccgcgctgctgcgcgcgctgtccgagcagaac
tacgccacccccaccccgatccaggccgaagcgatcccgctggcgatggccggccacgac
ctgctcggcggcgcccagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
caccgcctggccaccgccgcgccgcagggcggcccgcgcaagccgcgcgcgctgatcctg
gcgccgacccgcgagctggcgctgcaggtcagcgacagcctgcgcggctacgccaagtac
ctgcgcctgaacgtgcacgccatctacggcggcgccggcatgggcccgcagctcgacgcg
ctgcgtcgcggcgtcgacgtgctggtggccaccccgggccgcctgatcgaccacctcgag
cgcggcagcgccaagctcgacgcggtcgagctgttggtcatggacgaagccgaccgcatg
ctcgacatgggcttcctgccggcgatcaagcgcatcctcggccgcctgccggccagccgc
cagaccctgctgttctcggccacgttcgaggcccagatcaagcagctggcgctggagttc
atgcgcaccccgcagcaggtgcagatcgccgccaagaacgtcgtggccgacgcgatcagc
caccgcgtgcacccggtcgacggcggccgcaagcgcgacctgctgatccagatcctggcc
gcgcgcccgaacgatcaggtgatcgtgttcggccgcaccaagcacggctgcaaccgcctg
gccgaacagctcgaagacgccggcctgaaggccgtcgcgatccacggcaacaagagccag
gcccagcgccagaaagccctgcgcgacttcaaggcgaacaaggcccgcgtgctggtcgcc
accgacgtcgccgcgcgcggcctggacatcccgagcctgccgctggtgatcaacttcgac
ctgccgatggtggccgaggactacgtccaccgcatcggccgcaccggccgcaacggcgcc
accggcgaagccctgtcgctggtctcgccggacgaagccggcctgctgcggcagatccag
cgcatcctcaaggacgacatcgagatggtcagcgtcgccggtttcgaaccctcgcgcccg
ctgcgcatgggctccgacgcccccggcgcgcgccgtccgggcccgggcggcaacaaccgc
ggcaacaacgccccgcgcaagcccgcccaccgtccgcacggcaagcccgcgccgcgccac
gcgcatgccggcccgaagcagcaccgcggcggcaacggcggtggcggccagcagcagggc
cagcgccgggatcgtagcgcggggtga

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