Lysobacter enzymogenes C3: GLE_3468
Help
Entry
GLE_3468 CDS
T04371
Name
(GenBank) DEAD/DEAH box helicase/helicase conserved C-terminal domain
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lez
Lysobacter enzymogenes C3
Pathway
lez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLE_3468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lez03019
]
GLE_3468
Enzymes [BR:
lez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GLE_3468
Messenger RNA biogenesis [BR:
lez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GLE_3468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
Cas3-like_C_2
AAA_22
Shikimate_DH
HEM4
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ALN58813
UniProt:
A0A0S2DKC4
LinkDB
All DBs
Position
complement(3865808..3867154)
Genome browser
AA seq
448 aa
AA seq
DB search
MTFESLGLAPALLRALSEQNYATPTPIQAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLL
HRLATAAPQGGPRKPRALILAPTRELALQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDA
LRRGVDVLVATPGRLIDHLERGSAKLDAVELLVMDEADRMLDMGFLPAIKRILGRLPASR
QTLLFSATFEAQIKQLALEFMRTPQQVQIAAKNVVADAISHRVHPVDGGRKRDLLIQILA
ARPNDQVIVFGRTKHGCNRLAEQLEDAGLKAVAIHGNKSQAQRQKALRDFKANKARVLVA
TDVAARGLDIPSLPLVINFDLPMVAEDYVHRIGRTGRNGATGEALSLVSPDEAGLLRQIQ
RILKDDIEMVSVAGFEPSRPLRMGSDAPGARRPGPGGNNRGNNAPRKPAHRPHGKPAPRH
AHAGPKQHRGGNGGGGQQQGQRRDRSAG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgaatccctgggcctggcgcccgcgctgctgcgcgcgctgtccgagcagaac
tacgccacccccaccccgatccaggccgaagcgatcccgctggcgatggccggccacgac
ctgctcggcggcgcccagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
caccgcctggccaccgccgcgccgcagggcggcccgcgcaagccgcgcgcgctgatcctg
gcgccgacccgcgagctggcgctgcaggtcagcgacagcctgcgcggctacgccaagtac
ctgcgcctgaacgtgcacgccatctacggcggcgccggcatgggcccgcagctcgacgcg
ctgcgtcgcggcgtcgacgtgctggtggccaccccgggccgcctgatcgaccacctcgag
cgcggcagcgccaagctcgacgcggtcgagctgttggtcatggacgaagccgaccgcatg
ctcgacatgggcttcctgccggcgatcaagcgcatcctcggccgcctgccggccagccgc
cagaccctgctgttctcggccacgttcgaggcccagatcaagcagctggcgctggagttc
atgcgcaccccgcagcaggtgcagatcgccgccaagaacgtcgtggccgacgcgatcagc
caccgcgtgcacccggtcgacggcggccgcaagcgcgacctgctgatccagatcctggcc
gcgcgcccgaacgatcaggtgatcgtgttcggccgcaccaagcacggctgcaaccgcctg
gccgaacagctcgaagacgccggcctgaaggccgtcgcgatccacggcaacaagagccag
gcccagcgccagaaagccctgcgcgacttcaaggcgaacaaggcccgcgtgctggtcgcc
accgacgtcgccgcgcgcggcctggacatcccgagcctgccgctggtgatcaacttcgac
ctgccgatggtggccgaggactacgtccaccgcatcggccgcaccggccgcaacggcgcc
accggcgaagccctgtcgctggtctcgccggacgaagccggcctgctgcggcagatccag
cgcatcctcaaggacgacatcgagatggtcagcgtcgccggtttcgaaccctcgcgcccg
ctgcgcatgggctccgacgcccccggcgcgcgccgtccgggcccgggcggcaacaaccgc
ggcaacaacgccccgcgcaagcccgcccaccgtccgcacggcaagcccgcgccgcgccac
gcgcatgccggcccgaagcagcaccgcggcggcaacggcggtggcggccagcagcagggc
cagcgccgggatcgtagcgcggggtga
DBGET
integrated database retrieval system