Lysobacter enzymogenes C3: GLE_3982
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Entry
GLE_3982 CDS
T04371
Symbol
hrpA
Name
(GenBank) ATP dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lez
Lysobacter enzymogenes C3
Brite
KEGG Orthology (KO) [BR:
lez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lez03019
]
GLE_3982 (hrpA)
Enzymes [BR:
lez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLE_3982 (hrpA)
Messenger RNA biogenesis [BR:
lez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GLE_3982 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_23
SRP54
AAA_30
NACHT
Cas3-like_C_2
T2SSE
FtsK_SpoIIIE
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALN59324
UniProt:
A0A0S2DL83
LinkDB
All DBs
Position
complement(4481431..4485555)
Genome browser
AA seq
1374 aa
AA seq
DB search
MSTSQSPQSRQADASAALRQARRAIDGALSRDRGRLHGLWSRWSGKPADAAAQEAFAKAL
AASVAQRQARAAALPHAPVDPALPIAAEAERIVELIRKHPVVVIAGETGSGKTTQLPKLC
LAAGRGAAGLIGCTQPRRIAARAVARRVAEELNTELGGAVGYQVRFNENVGERTAVKFMT
DGILLAEIQSDRFLSAYDTILIDEAHERSLNIDFLLGYLKQLLKKRPDLKVIVTSATIDT
ERFAAHFDGAPVVSVEGRGYPVSVRYRPLDDAGPGTGDPGPADRRSASGPGARVPGPALS
VNDGIVAACDEITREDPRGDVLIFLSGEREIRDAHQALERRKYRETEVLPLYARLSVRDQ
DRVFNPGPKRRIVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRGKLDRLHIEPISQAS
ADQRKGRCGRISEGTCYRLYSEADFESRPQYTDPEIRRAALAGVILRMLSLGLGDIEAFP
FLEPPDSRAIADGWQQLNELGAVDEQRKLTATGRTMARLPVDVKLARMLVAANQHGCLRE
MIAIAAFLGIQDPRERPSDQRAAADNAHALFADPRSEFVGILKLWDAYQQAHEELTQSKL
RGWCEKHFLGFLRMREWRELHRQLKLLCVETGLGTRDPGPEIADSAGPGSPVPGPEAYAR
LHRALIAGLPTQIGFRGDKGVYDGPRGRKYTLFPGSPLAKKPPPWLLSATLLDTERVWSM
TNAAIEPEWAIQELPHLLARRHHDPRWSRSQGRVVGSEQISLFGLVLAPKRPIHYGALYP
EESRAIFARDALVTGEINTRAAFLPRNLAALARAREEEAKQRRAGLVVDEEWMAQWYLDR
LPPQVHNVQALDAWYQKLAANEKAALEWSGDDLMIGGESEAARFPPYLQLGQARLAVGYR
FEPGAPDDGMTLAVPLHLLNALDPAQLSWLAPGFVADKAAALIKSLPKALRRNFVPAPDF
AKAFFEAHPKPEADDFVGALARFLRKLGGVEIAATDFDAASIEAHLRMNLRLLEYPAGGD
GRRGKGEPVVLAESRDLDELRARFGERAARAFAARAADGLGQRGLTTFPEQPIALSVPGA
AGVPAFPALHDDGDSVSLRVHAEREAALRAHPRGVRRLLALALVEKLKQARKQLPIQPKI
GLLYAAIESAAPRQERDSLLRRAQSGNAAGRAALDRPRDGDRLREDLVDGAVQSLLGEDA
ELVQVRDAAAFEQRRDEVARKLFPEAMERLRQAEAILAAVAEVRARLESPLMGWASGNLD
DMRAQLARLTPPGFLRDAPTAVLAEYPRYLKALATRGERALRDPVRDQARMLELKPFVDA
LDAATAAGEGGDAGWQALRWDIEELRVSLFAQELGVRGGVSPKKLAQRLAALRG
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccagccaatccccacagtctaggcaggccgatgcgagcgctgcgttacggcag
gcgcgccgcgccatcgacggcgcgctgagccgcgaccgcggccgcctgcacgggctgtgg
tcgcgctggagcggcaagcccgccgatgcggccgcgcaggaggccttcgccaaggcgctg
gcggcctcggtcgcgcagcgtcaggcgcgcgcggcggcgttgccgcacgcgccggtggat
ccggctttgccgatcgcggcggaagccgagcgcatcgtcgagctgatccgcaagcatccg
gtggtggtgatcgccggcgagaccggttcgggcaagaccacccagctgcccaagctgtgc
ctggccgccggccgcggcgccgccggcctgatcggctgcacccagccgcgccgcatcgcc
gcgcgcgcagtggcgcggcgcgtggccgaggaactgaacaccgagctcggcggcgcagtc
ggctatcaggtgcgcttcaacgagaacgtcggcgagcgcaccgcggtcaagttcatgacc
gacggcatcctgctggccgagatccagtccgatcgcttcctgtcggcctacgacaccatc
ctcatcgacgaggcgcacgagcgcagcctcaacatcgacttcctgctcggttacctgaaa
cagctgctgaagaagcgcccggacctgaaggtcatcgtgacctcggcgaccatcgacacc
gagcgtttcgccgcgcatttcgacggcgcgccggtggtcagcgtggaggggcgcgggtat
ccggtgagcgtgcgctatcggccgttggacgatgcgggaccggggaccggggacccggga
ccggcagatcgccgcagcgcttccggtcccggggcccgggtcccgggtcccgcactgagc
gtcaacgacggcatcgtcgccgcctgcgacgagatcactcgcgaagacccgcgcggcgac
gtgctgatcttcctgtccggcgagcgcgagatccgcgacgcccaccaggcgctggagcgg
cgcaagtaccgcgaaaccgaagtgctgccgctgtacgcgcggctgtcggtgcgcgaccag
gaccgggtgttcaacccgggccccaagcgccgcatcgtgctggcgaccaacgtcgccgaa
acctcgctgaccgtgccgcgcatccgctacgtagtcgatccgggcctggcccgggtcaag
cgctacagcccgcgcggcaagctcgaccgcctgcacatcgaaccgatcagccaggccagc
gccgaccagcgcaagggccgctgcggacgcatcagcgaaggcacctgctaccgcctttac
agcgaggccgatttcgaatcgcggccgcagtacaccgacccggaaatccgccgcgcggcg
ctggcgggcgtgatcctgcgcatgctgtcgctggggctcggcgacatcgaagccttcccg
ttcctggagccgcccgacagccgcgcgatcgccgacggctggcagcaattgaacgagctc
ggcgcggtcgacgagcagcgcaagctgaccgcgaccgggcgcacgatggcgcgcctgccg
gtggacgtgaagctggcgcgcatgctggtggccgccaaccagcacggttgcctgcgcgag
atgatcgccatcgccgcgttcctgggcatccaggacccgcgcgagcgtccgtccgaccag
cgcgccgcggccgacaacgcgcatgcgctgttcgccgacccgcgttcggaattcgtcggc
atcctcaagctgtgggacgcctaccagcaggcgcacgaggaactgacccagtccaagttg
cgcggctggtgcgagaagcacttcctcggcttcctgcgcatgcgcgaatggcgcgagctg
catcgccagctgaagctgctgtgcgtggagacgggactggggacccgggacccgggaccg
gaaatcgcggactccgcgggtcccgggtccccggtccccggtcccgaggcctacgctcgc
ctgcaccgcgcgctgatcgccggcctgccgacccagatcggtttccgcggcgacaagggc
gtctacgacggcccgcgcgggcgcaagtacaccttgttccccggttcgccgctggcgaag
aagccgccgccgtggctgctgtcggcgaccctgctcgacaccgagcgggtgtggtcgatg
accaacgccgcgatcgagccggagtgggcgatccaggagctgccgcacctgctcgcgcgc
cgccaccacgacccgcgctggtcgcgctcgcagggccgcgtggtcggcagcgagcagatc
agcctgttcgggctggtgctggcgccgaagcggccgatccactacggcgcgctgtatccg
gaggaaagccgggcgatcttcgcccgcgacgcgctggtcaccggcgagatcaacacccgc
gccgcgttcctgccgcgcaatctcgccgcgctggcccgagcgcgcgaagaggaagccaag
cagcgccgcgccgggctggtggtggacgaggaatggatggcgcagtggtacctcgaccgc
ttgccgccgcaggtccacaacgtccaggcgctcgacgcctggtaccagaagctggcggcg
aacgagaaggcggcgctggagtggagcggcgacgacctgatgatcggcggcgagagcgag
gccgcgcggttcccgccgtacctgcaactgggccaggcccggctggcggtgggctatcgc
ttcgaacccggtgcgcccgacgacggcatgacgttggcggtgccgctgcacctgctcaac
gcgctcgacccggcgcagctgtcgtggctggcgccgggtttcgtcgccgacaaggccgcg
gcgctgatcaagtcgctgccgaaggcgctgcggcgcaacttcgtgccggcgccggatttc
gccaaggcgttcttcgaggcccatcccaagcccgaggccgacgatttcgtcggcgcgctg
gcgcggttcctgcgcaagctcggcggggtggagatcgcggcgacggatttcgacgccgcg
tcgatcgaagcgcatctgcgcatgaatctacggttgctcgaatacccggccggcggcgac
ggccgccgcggcaagggcgagccggtcgtgctggccgagtcgcgagacctcgacgagctg
cgcgcgcgtttcggcgaacgcgccgcgcgcgcgttcgccgcgcgcgccgccgacggcctg
ggccagcgcggtttgacgacgttccccgagcagccgatcgcgctgtcggtgcccggcgcc
gccggcgtgccggcgttcccggcgctgcacgacgacggcgacagcgtgtcgttgcgcgtg
cacgccgagcgcgaggcggcgctgcgcgcgcacccgcgcggggtgcggcgcctgctggcg
ctggcgctggtggaaaagctcaagcaggcgcgcaagcagctgccgatccagcccaagatc
ggcctgttgtatgcggcgatcgaatcggccgcgccgcgccaggagcgcgattcgctgctg
cgtcgggcccagtccggcaacgccgccggccgcgccgcgctcgaccgtccgcgcgacggc
gaccggctgcgcgaggatctggtcgacggcgcggtgcagtcgctgctcggcgaggacgcc
gagctggtgcaggtgcgcgatgcggccgcgttcgaacaacgccgcgacgaggtcgcgcgc
aagctgttccccgaggcgatggagcgcttgcgccaggccgaggcgatcctggcggcggtg
gccgaggtgcgcgcgcgtctggaatcgccgctgatgggctgggccagcggcaacctcgac
gacatgcgcgcgcagctggcgcggctgaccccgccgggcttcctgcgcgacgcgccgacc
gcggtgttggccgagtacccgcgctatctcaaggcgctggcgacccgcggcgagcgcgca
ctgcgcgatccggtgcgcgaccaggcgcgcatgctcgaactcaagcccttcgtcgacgcg
ctggacgcggctacggcggcgggcgagggcggcgacgcgggctggcaggcgctgcgctgg
gacatcgaggaactgcgggtgtcgttgttcgcgcaggaactgggcgtgcgcggcggcgtg
tcgccgaagaagctggcgcaacggctggcggcgttgcgcggttga
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