Legionella fallonii: LFA_1928
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Entry
LFA_1928 CDS
T03771
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfa
Legionella fallonii
Pathway
lfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LFA_1928 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfa03400
]
LFA_1928 (mfd)
Enzymes [BR:
lfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LFA_1928 (mfd)
DNA repair and recombination proteins [BR:
lfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LFA_1928 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CEG57320
UniProt:
A0A098G741
LinkDB
All DBs
Position
I:2135450..2138896
Genome browser
AA seq
1148 aa
AA seq
DB search
MVTNTLLYRPTHTKQIWGQLQGSSLVLAVAEYCQQTSGVKLLIAQDNLSASQLQDELQFF
LNGSNTPQEILFFPDWETLPYDQFSPHQDIISERLYTLSRLQQVTDAVIITSASTLMHRL
CPPEFLNQYALMLKEGQKLDLNAFRNQLQQSGYHCVNKVLEHGEFALRGSIIDVYPMGSN
MPFRIELFDDEIESLRKFDTETQRTIEKIPQINVLPAREFPLNEQSQLLFRKAFREAFPV
NPSQCPIYEAITEGQFPSGIEYFLPLFFEKTVTFFDYLPQNAKICLIENIQDSGEQFWQE
LTERYEQRRYDISRPILSPQECFINPTELLTQANTYEQLRLYHKSSEKKGTVVNFDINEA
PQLPIDRKTPEPLSRLREYCQSHSRRYLIVVESAGRREVLLDLLKPSGITPKIQSSWYDF
IHDNALINITTGPLIYGCELTNNNISIIVESQLFGEQSTPQRRGSQKTVDPDLIIRDMAE
LRLGAPVVHLQFGVGRYQGLQHITTNNISSEFLVLTYAGEDKIYVPVTSLHLISRYTGVD
SEHAPLHKLGSDLWQKEKKKAAEKVHDVAIELLDLYAKREAQPGHQYDFNQTEYTKFASG
FPFTETQDQLNAVEQIVKDMQSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNEKQVCVLV
PTTLLAGQHFESFRDRFADFPINIELLSRFRSAKETESVLAALASGKVDIVIGTHKLFQS
NIAFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLI
ATPPAKRLAIKTFWQEKKDIVIREAVLREILRGGQVFFLHNNVQTIDRICQDLQTLVPEA
KIRSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQL
HQLRGRVGRSHHQAYAYLLTPDEKSLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAG
ELLGEEQSGNMQAVGFNLFMEMLDKAVSDLKAGKIPELAAPIHQGPEIDLRISAIIPDDY
IGDIHNRLIMYKRISNAKTKEQLHDLQIELIDRFGLLPAPVKHLLLITELKLKAELLGIH
KISAAAEKAKLDFIEKPSINPAVLINLIQVHAKRYQMEGPQRLRFTLDSTTPEERIFEIS
SLLNKLAS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggtgactaatacactactctatcgaccaacacataccaagcaaatatggggacaactc
cagggtagtagtcttgttcttgccgtggcagaatattgtcagcaaacgtctggcgtaaaa
ttacttattgcgcaagacaatcttagcgcaagccaattacaagatgaattacaattcttt
ctgaatggctccaatacgcctcaagagatattgtttttcccagattgggaaacattacct
tacgatcaattctcccctcatcaagatattatctcagaaagactctatactttaagccgg
ctacaacaagtgactgacgcggtaattatcacatcagccagtaccttaatgcacagactc
tgcccaccagagtttttaaatcaatatgctctaatgctaaaagaagggcaaaaactagat
ctgaacgcatttagaaaccaactacaacaatccggatatcattgtgttaataaagtttta
gaacatggtgaatttgcgctacgtggctctattattgatgtgtaccccatgggaagtaac
atgccatttcgtattgaattattcgatgacgaaatagagagcttgagaaaatttgatacc
gaaactcagcgtactatagaaaaaataccacaaattaatgtcttacctgcgcgcgagttt
cctttaaatgagcaaagccaacttctctttagaaaggcgtttagagaagcatttccagta
aacccaagtcaatgccccatttacgaagcaataactgaaggccaatttccttcaggtatc
gaatattttcttcccttattttttgaaaagacggtcactttctttgattatctccctcaa
aatgccaaaatttgtcttattgaaaatattcaagatagtggcgaacaattctggcaggag
cttactgaacgatatgaacaaaggcgctatgatatcagtcgtcctattctctctcctcaa
gaatgttttattaacccgaccgaattattaactcaggcaaatacctacgaacaactccgc
ttgtatcacaaatcttcagaaaaaaagggaacagtagttaactttgatattaatgaggca
cctcaactacctatagacaggaagactcctgagcccctcagtcgcttacgcgagtattgt
caatctcactctcgtcgctatttaatagtcgtcgaaagtgcagggcgcagagaagtatta
ctcgatctactaaaacccagtggcatcacccccaaaatacaatcatcctggtatgatttt
attcatgataatgcactaatcaatattacaacggggccattgatttatggttgtgaatta
acaaataacaacataagcatcattgttgagtcacaattatttggtgagcagagtaccccc
caacgccgtggttcgcaaaaaacggttgatcccgatttaattattcgcgatatggctgag
ctgcgattaggcgcgcctgtagttcatttacaatttggagtaggacgctatcaaggtcta
cagcacatcactaccaataatatttccagcgagtttttagttttaacctacgcaggcgag
gacaaaatttatgtccctgtcacttcattacatttaatcagccgctacactggagtagat
agtgaacatgcccccttacataagctaggttcggatctatggcaaaaagagaagaaaaaa
gctgcagaaaaagtccacgatgtggctattgaattgctagatctatatgccaaaagagag
gctcagcctggccatcaatatgattttaatcaaacagaatatacaaagtttgctagtggt
ttccccttcactgaaactcaagatcagctaaatgccgtagaacaaattgtaaaagacatg
caatcctctcgtcctatggaccgactcatctgtggtgacgtcggctttggcaaaacagaa
gtagccatgcgcgcagcttttgtagcggtgcaaaatgagaaacaagtctgcgtacttgtt
cctaccacgctactagcaggacagcactttgaatcatttagagaccgctttgccgatttt
cccattaatatagagttattatctcgttttcgtagtgccaaagagactgaaagcgtcctt
gcagcattggcttcaggaaaagtagatatagtgataggcactcataaattatttcaaagc
aatatagcttttaagaatctgggcttactaattattgatgaagaacatcgctttggggtc
aagcaaaaagaacatatcaaatcgcttaggactcatgttgatattttatcaatgacagcc
actcccattcccaggacattaaacatggctatggcgggaattagagacatttctttaatc
gctactccgcccgctaaacgcttagcgattaaaacattttggcaagagaaaaaagatata
gtgattagagaggccgtactacgtgaaatattaagaggcggtcaagtattctttctccat
aataacgtacagactatagatagaatatgccaggacttacaaactctcgttcctgaggca
aaaatccgtagtgctcacggacaaatgcgagaaagagaattagaacgagtgatgtctgat
ttttatcatcaccgttttaatgtcctagtttgtaccaccattatagaaactggaatagat
atacctacagccaatacgattatcatcgatagagcagataaatttggtttagcccagcta
catcaattaagagggcgagtaggacgctctcatcaccaagcatacgcctatttattaacc
cctgatgaaaaatcactaactcctgatgcagtcaaacgcttggaagcgatagtctcatta
gaggatttgggtgcaggatttaccctagcgactcatgatcttgaaatcagaggagctggc
gagcttttaggagaagagcaaagtggtaatatgcaggctgttggctttaacttattcatg
gaaatgctcgataaagcagtaagtgatttaaaagcaggaaaaataccggaattagcagcc
ccgatacatcaagggcctgaaattgatttacgtattagcgccattattccagacgattac
ataggggatatccataatcgcttaattatgtataaaagaatttccaacgcgaaaacaaaa
gagcaattacatgatttacaaatcgaattaatcgatcgctttgggttattgcctgcccct
gtgaaacatttattattaattactgaattaaaattaaaggcggaactattaggaattcac
aagatcagtgcagctgctgaaaaagccaaattggattttattgaaaaaccatctataaat
cctgctgttttaatcaatttaattcaggttcacgctaaacgttatcagatggaaggccct
caacgcttgcgttttactttagacagtaccacccctgaagagcgcatctttgagatcagt
tccttgctcaataaattggcctcttaa
DBGET
integrated database retrieval system
