Laceyella sacchari: C1X05_01280
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Entry
C1X05_01280 CDS
T05304
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1X05_01280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfb03021
]
C1X05_01280 (rpoC)
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_01280 (rpoC)
Enzymes [BR:
lfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1X05_01280 (rpoC)
Transcription machinery [BR:
lfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1X05_01280 (rpoC)
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1X05_01280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AUS07623
LinkDB
All DBs
Position
253362..256976
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVVDPGPTPLEKKQLLSEKEFRAYREKYGTAFTAMMGAEAIKRLLQ
EIDLDKEVESLKEELQTAQGQRRNRAIKRLEVLEAFRASGNSPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVAKGLAHNIKSAKRKVERVHPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGCYYLTIEKEGEKGEGSIFYSISEAINAYQHGYVSLHSRIAIP
ARNVKKTSFTEAQKNSLLVTTPGKLIFNEIFPEEFPYICEPGKKNFASTPDKYFIFDKGV
NVREFISKMDDPGALTKKDLGALIAECFRRFGTTTTSEILDRVKELGYKFSTKAGITMSV
SDVNVPEEKKAILAQAEEDVAKVMKQYRRGLITEDERYERVISIWSRSKDQITKVLMENM
GKYNPIYMMAHSGARGNVSQITQLAGMRGLMANPSGRIIEQPIRTNFREGLTVLEYFIST
HGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDRGMTVSAIADGNEVIENLY
DRLVGRFAFQTVRHPETGEIIVGINEMIDEEIANKIVDAGLKEVTIRSVLTCRTKHGVCK
KCYGRNLALGTPVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIAGEVVDIRETKDRREIEIKGDVESKIHPVPYGSRLRVSVGDYVNAG
DELTEGSVDPKELLRIKGVAGVQRYILQEVQKVYRLQGVEINDKHVEVMIRQMMRKVRIT
DAGTTDLLPGAVVDIHEYEAANRKVLLNGGDAAVARPVLLGITKASLETESYLSAASFQE
TTRVLTDAAIKGKLDGLLGLKENVIIGKLIPAGTGISRYRNQTYEIVGDTTESDQAGKET
MLVK
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgttggatgtaaacaactttgagtatatgaaaatcggcctcgcctctcctgaaaaaatc
cgctcttggtctcgcggtgaggttaaaaagccggaaacaatcaattatcgcacgctcaaa
ccggaaaaagaaggtttgttctgtgagaagatctttggtccaaccaaagattgggagtgt
cactgcggtaaatacaaacgcgttcgttacaaaggggtagtctgtgaccgatgcggcgtg
gaagtgacccgcgctaaagtgcgtcgtgaacggatgggccacattgagttggctgcaccg
gtatcccatatctggtatttcaaagggattccgagccggatgggtctagtgttggacatg
tctccccgctcattggaggaagtcatttatttcgcctcctatgtggttgtggacccgggt
ccgaccccgttggagaagaaacagcttctgtctgaaaaagaatttcgcgcttatcgcgaa
aaatacggcaccgcctttacggcgatgatgggcgcggaagcgattaagcgtctgttgcaa
gagatcgacctcgataaagaggtggaaagcctgaaagaagagttgcagacggcgcaaggg
caacggcgcaaccgcgcgatcaagcgcttggaagtgttggaagccttccgtgcttccggc
aattctccggattggatgatccttgacgtgttgccggtcatcccgccggagttgcggccg
atggtgcaattggatggtggccgttttgccacatccgacttgaacgatctctaccgccgt
gtaatcaaccgtaacaaccggttgaaacgcctgctcgacttgggtgcacctgatatcatc
gtgcaaaacgaaaaacggatgttgcaggaagcggttgacgcgctgatcgataacggtcgt
cgcggtcgtccggttaccggaccggggaatcgcccactcaagtctctctcccacatgctg
aaagggaagcagggtcgtttccggcaaaacctacttgggaagcgtgtcgactactctggc
cgttccgttatcgttgtcggcccgtacctgaaaatgtaccaatgcggtttgccaaaagaa
atggcgctggaactgtttaaaccgtttgtgatgaaagagttggttgctaaggggctcgcg
cacaacattaagagcgccaagcgtaaagtggagcgcgttcaccccgaagtgtgggatgtg
ttggaagaagtgatcaaggagcatcccgtgctcctcaaccgggcgcccacgcttcaccga
ttgggaattcaagcgtttgagccgattctcgtagaagggcgcgccatccgtcttcatccg
ctcgtatgtacggcgtataacgctgacttcgacggagaccaaatggctgtgcacgttccg
ctatctgcggaggcgcaagcggaagctcgcctgttgatgctggcggcacaaaacatcttg
aacccgaaagacggcaagccggttgtaaccccgtctcaggacatggtattgggttgctat
tacctgaccattgaaaaggaaggcgaaaaaggggaaggctcgatcttttattcgatttcc
gaagccatcaacgcttaccagcatggctacgtcagcctgcattcccgcattgccattcca
gcgcgcaatgtgaagaaaacctccttcactgaagcgcagaaaaatagcttgttggtgacg
actccgggtaagctgatcttcaacgagatcttccctgaagagttcccatacatctgcgaa
ccgggcaaaaagaactttgcaagcactccggataaatacttcatctttgataaaggcgtg
aatgtccgcgaatttatcagtaagatggatgatccgggcgccctgaccaaaaaggatctg
ggtgcgctgatcgcagagtgcttccgccgtttcggtacgaccactacgtcggaaatcctc
gaccgggttaaagagcttggctataagttctccaccaaagcggggatcacgatgtccgtc
tctgacgtaaatgtgccagaggaaaagaaagcgatcttggcgcaagcggaagaggatgtc
gccaaagtgatgaagcaataccgccgtggtttgattaccgaagacgagcggtacgagcgc
gtcatctccatctggagccgctcgaaggatcagatcacgaaagtgctcatggaaaacatg
ggtaaatacaacccgatttacatgatggcgcattctggtgcgcggggtaacgtgtcccag
atcacccagttggcagggatgcggggtctgatggccaacccatccggacggatcatcgag
caaccgatccgtaccaacttccgtgaaggcttgactgtattggagtacttcatctccacc
cacggtgcgcgaaaaggcttggcggataccgcgcttagaacggctgactcgggttacttg
acccgccgtctagtagacgtggcgcaagatgttatcgtgcgtgaagaagattgcggcacc
gaccggggtatgaccgtaagtgcgatcgccgatggaaacgaagttatcgaaaacttatat
gatcgtcttgtaggacggtttgctttccaaacggttcgccatccggaaacaggcgagatt
atcgtcgggatcaatgagatgatcgacgaagagatcgccaacaaaatcgtcgatgcaggt
ctgaaagaagttacgattcgctcggttcttacctgtcgcaccaaacacggcgtttgcaaa
aagtgctacggccgcaacttggccttgggcacaccggtggaaatcggcgaagctgtcggc
attatcgccgcacagtcgattggtgagccgggtacccagctgacgatgcgtaccttccac
accggtggggttgcgggtgacgacatcacccaaggtttgccgcggattcaggagctgttt
gaagcgcgcaatccgaaggggcaagcggtgatcagcgagattgccggggaagtagtcgac
attcgtgaaaccaaagaccgtcgcgaaatcgagatcaaaggagacgtggagtccaaaatt
catcccgtcccatatggttcccgcctgcgtgtttcagtcggggattatgtcaacgccggt
gacgagttgactgagggttctgttgacccgaaagagcttctgcgcatcaaaggggtggct
ggcgtgcaacgctacatcctccaagaagtgcagaaagtctaccgcctgcaaggggtggaa
attaacgacaagcacgtagaagtgatgattcggcagatgatgcgcaaggtacggattacc
gatgcgggtacgaccgatttgttgccgggtgcagtggtcgacattcacgaatatgaggcg
gctaaccgcaaagtgttgttgaacggcggagatgcggctgttgcccgtcctgtcctgttg
gggattaccaaggcttcgttggaaacagagtcttacctgtcagcggcatcgttccaagaa
actacacgggtcttgaccgatgcggcgatcaaaggcaaattggatggactcttgggtctg
aaggagaacgtcatcatcgggaagctgattcccgctggaaccggtatctcccgctatcgc
aaccaaacgtatgagattgttggcgacacaactgaatcggaccaagccggcaaagagacg
atgcttgttaagtag
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integrated database retrieval system
