Laceyella sacchari: C1X05_03330
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Entry
C1X05_03330 CDS
T05304
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03030
DNA replication
lfb03430
Mismatch repair
lfb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1X05_03330 (polC)
03430 Mismatch repair
C1X05_03330 (polC)
03440 Homologous recombination
C1X05_03330 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfb03032
]
C1X05_03330 (polC)
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_03330 (polC)
Enzymes [BR:
lfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C1X05_03330 (polC)
DNA replication proteins [BR:
lfb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C1X05_03330 (polC)
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C1X05_03330 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_3
DNA_pol_A_exo1
Rv2179c-like
RNase_H_2
DEDDh_C
T2SSK
Zn_ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
AUS07951
LinkDB
All DBs
Position
619795..624111
Genome browser
AA seq
1438 aa
AA seq
DB search
MTGQEALVNLFKEVQLPTEWLDQQFKEGTITEVLVDRAAQAWKIGIRLPEPIDAGIWQEF
QVRIKKHFQPHIQVNVLFDYDHIDHDTVLNMYKGFIQRWIQERVAPAASTWFGQTEWRIQ
DGVIRIDFPNPATLQMAEQRGLERHIARCYQRITGAELRVRFVCEKPELEVSPAAYFQEK
KQQEERQLVAQALAEQKERAEKAKSGEKPDVPGPVLEKKIGYAIQDEPVSIASITEEERK
VTIKGKVFKAEVKELKSGRKLLTFNITDYTNSIACKFFASPREKEQEQIIAMIKDGDWLK
VRGSVQFDTFSRELVMMVSDLMEVHVPERMDTAEEKRVELHLHTSMSTMDGITDVGKVIE
RVAKWGHRAVAVTDHGGAQAFPDAYDASKKHGVKVLYGLEANVVDDGVPMVMNAADRVLA
DDTYVVFDVETTGLSAVHDVIIELAAVKLKNGEIIDTFSEFANPHRKLSQQIIELTHITD
DMLTDAPEIDDVIARFLSFIEDSVLVAHNARFDMGFLQEAVKRIGEKPVTNPVLDTLELA
RFLFPTLRNHRLNTLADKLGVKLEQHHRAIYDAEATGHILWKMLLMAKEKGITNLAELNE
QRNDTDYTRMRPFHAILLVKNQEGMKNLYKLISMSHLKYFYRVPRIPRSELVKHREGLII
GSGCERGELYEAALNKAPSEVEEIARFYDYLEIQPVEYNMHLVEKGLVESPERLREANRL
LVEIGERLGKPVVATSNSHYLDEHEAIFREIIAMNQTGAKPQLPLPKAHLRTTDEMLEEF
SYLGAEKAKEVVVTNTQLIADQIDDGIKPFPDETFTPELEGAEEELTEICYRTAKEWYGD
PLPEIVKSRLERELGSIIKHGFSVLYMISQKIVYKSLQDGFLVGSRGSVGSSLVAALSFI
SEVNPLPPHYRCESCQYSEFITDGSYESGFDLPDKKCPKCGTNLWKDGHDIPFETFLGFE
GDKAPDIDLNFDGEYQLRAHQYTEELFGKAYIYRAGTVGTVQEKTGYGYAKKYAEQKEIT
LRQAELDRLAQGCVGVKRSSGQHPGGLMVVPQNKEVFDFTPIQHPADDMKSGTITTHFDY
NAISGKILKLDLLGHTGPTIQRYLHEMTGIDPTKVPLGDPKVIELFRSTKSLGISPEDIN
GIEHGTLGIPEFGTYFARGILKDAKPKRFSELVRISGLSHGTDVWQGNVQDLINEGVCTL
SEAICCRDDIMLYLIRMGLPAKAAFKIMEKVRKGKGVTEEEADLMRQHNVPEWYIGSCQK
IKYMFPRAHAAAYVTAAVRIGWYKVYYPAEFYAALFSTKTKDFDIEEVLKGYNHVSRLIK
EINEKGFQASAKEKAFLTVLELVQEMYARGVKIKSVDLYRSPAEKFTVIDGELVPPFASI
SGVGESAAQNIVEARKEGEFLSKDDLQKRARLSSTVIEVLDRLGCLEGLPQSNQLALF
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgacggggcaagaggcgttagtgaatttgtttaaggaagtccaattgccgacagaatgg
ttagaccaacaattcaaagaaggaacgattactgaagtcctggtcgaccgggctgcacaa
gcctggaaaatcggaatccgcttgccagaaccgatagatgcggggatctggcaggagttc
caagttcggattaaaaaacattttcaaccacacatccaagtcaacgtgttgtttgactat
gatcacatagatcatgacaccgtattgaacatgtacaagggttttatccagcggtggatt
caggagagagttgccccggccgcttccacttggtttgggcagacagagtggcggattcaa
gatggggtgatccgcatcgatttccccaacccggccacactgcaaatggcggagcaacgt
gggttggaacggcacatcgcccgttgttaccagcggatcactggagcggagttgcgggtg
cgtttcgtatgtgaaaagcccgagttagaggtttcgccagccgcctattttcaggagaag
aagcaacaagaagagcggcagctagtggcgcaagcgctggctgaacagaaagaaagggcg
gagaaggccaaatcgggagaaaagcctgacgtacctggcccagtgctggagaagaagatc
ggttatgcgatccaggatgaaccggtttcgatcgcttccattactgaagaagagcggaaa
gtgacgatcaaagggaaagtgttcaaagcggaagtcaaggaattgaagagcggaaggaag
ctgttgacgtttaacatcaccgactacaccaattccatcgcttgtaaattcttcgcttct
ccccgtgaaaaagagcaagaacagatcattgccatgatcaaggacggggactggctgaag
gtgcgcggttcggttcagtttgacacgttttcccgtgagttggtcatgatggttagcgat
ctgatggaggttcatgtccctgagcggatggatacggctgaagaaaagcgggtggagttg
cacttgcacacctccatgtccaccatggacggcatcaccgacgtaggcaaggtgattgag
cgtgtggcgaagtggggacaccgcgcggtggcagtcaccgaccatggtggggcacaagcg
tttcctgacgcctatgacgccagcaaaaaacacggggttaaagtgttgtacggattggaa
gccaatgtggtcgacgacggggtgccgatggtgatgaatgcggccgaccgggtgctcgct
gacgacacctatgtggtgtttgacgtggagaccaccgggttgtcggcggtgcatgacgtc
attatcgaattggctgctgtcaagttaaagaatggggagattatcgacacgttctccgaa
ttcgccaatccccacagaaaactatcgcaacagattatcgagctgacccacatcacggat
gatatgctgacagacgccccagagatcgatgatgtgattgcccgttttctgtcctttatc
gaagatagtgtcttagtcgctcacaatgctcgctttgacatgggctttttgcaagaagca
gtgaaacgcatcggtgaaaagccggtaaccaacccggttttggacacgcttgagttggct
cgttttctgtttccgaccttgcgtaaccatcgcttgaacacattggctgataagctggga
gtcaagttggagcaacaccaccgggccatctacgatgcggaggcgacggggcacatcttg
tggaagatgcttctcatggccaaagaaaaaggcattaccaatctggctgaattaaatgag
caacgaaacgataccgattatacgcggatgaggccatttcatgccatcttgttggtgaaa
aaccaggaaggcatgaaaaatttgtacaaactgatctcgatgtcgcatttgaagtatttc
taccgggtgccacgcattccgcgtagcgaattggtgaaacaccgggaagggctgatcatc
ggttccggctgtgagcgaggagaattgtatgaagcggcgcttaacaaggcgccaagcgag
gtcgaagagatcgcccgcttttatgattaccttgaaatccaaccagtcgaatacaacatg
catctggttgagaaagggttggtggaaagcccggagcgcctccgtgaagccaaccggctg
ttggtcgaaattggggagcggttgggcaagcccgttgtcgccacttccaacagccattac
ttggacgagcatgaagccatcttccgtgagatcatcgcgatgaaccagaccggtgctaag
ccgcaattaccgttgccaaaggcgcatttgcggacgaccgatgagatgttggaggagttt
tcctatctgggggcggagaaagcgaaggaagtggtggtcaccaacacccagctaatcgct
gatcagatcgacgatggtatcaagccgttcccagatgaaacatttacccctgagttagaa
ggggcagaagaagaattaacggagatttgttaccgcaccgccaaagaatggtatggggac
ccgttgccagaaatcgtcaaaagccggttggagcgggagctgggttcgatcattaaacac
gggtttagcgtgttgtacatgatttcgcaaaaaatcgtgtacaaatcgctccaagacggg
tttttggtcggctcacggggatcggttggctcttcattggtcgcggccttgagcttcatt
tcagaagtgaatccgttgcctccgcactatcgttgcgagagttgccagtacagtgagttc
atcaccgatggctcttatgagagcggatttgacttgcctgacaagaaatgtccgaaatgc
gggactaacctgtggaaagacggacacgacattccctttgaaaccttcctgggctttgaa
ggggacaaggcgcccgatatcgatctcaactttgacggcgagtatcaactccgagctcac
caatacaccgaggaattgttcggcaaagcctatatttaccgcgcggggacggtgggcacc
gtccaagaaaagaccggatatgggtacgccaaaaaatatgcggagcaaaaagagatcaca
ttgcggcaagcggagctggatcggctggcgcaaggatgcgttggggtcaaacgttcgtcg
ggtcaacatccagggggactgatggttgtgccccaaaacaaagaagtcttcgactttacc
ccgattcagcatccagccgatgatatgaagtcgggcacgatcacgacgcactttgattac
aacgcgatcagcgggaaaatcttaaagttggacctgttggggcataccggtccgacgatc
cagcgttatctgcacgaaatgacgggaatcgacccgaccaaagtgccgctcggtgatccc
aaggtgatcgaactgttccgtagcaccaaaagtttggggatcagtcctgaagatatcaat
ggcattgaacacggtacccttggcattcccgagtttggcacttactttgcccgcgggatt
ctcaaagatgccaaacccaaacgctttagtgaactggtgcgcatttccgggctgtcacac
ggaacggacgtatggcaaggaaacgtgcaggatttgatcaatgagggtgtctgtaccctg
tcagaagcgatctgttgccgcgacgatatcatgttgtatctgatccgcatgggactgcca
gccaaagcggccttcaaaatcatggagaaggtgcgtaaagggaaaggcgtgacagaggaa
gaagcggacttgatgcggcaacacaatgtaccggagtggtacatcggttcctgccagaag
atcaagtacatgtttccgcgggctcacgctgccgcttatgtgactgcggcggtgcggatt
ggttggtacaaggtgtattatccagcagagttttatgcggctttgttctccaccaaaacg
aaagactttgacatcgaagaggtgctcaaaggatataatcatgtgtctcgcttgatcaaa
gagatcaatgagaaaggattccaagcgtcagccaaggagaaggctttcttgacggtgttg
gaattggtgcaggaaatgtatgcgcgtggcgtcaagatcaaatcggtggatctctatcgt
tcgccagcggagaaatttacggtgatcgatggagagcttgtgccgcccttcgcttcaatt
tccggcgtgggcgagagcgccgcacaaaatatcgtggaagcgcgcaaagagggcgagttc
ctctcaaaagatgacttgcaaaagcgggcgcgcctgtccagtaccgtgatagaagtgctt
gatcgcttggggtgtctggaaggtttgccgcaaagcaatcaattggcgttgttttaa
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integrated database retrieval system
