Laceyella sacchari: C1X05_04405
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Entry
C1X05_04405 CDS
T05304
Name
(GenBank) helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03420
Nucleotide excision repair
lfb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1X05_04405
03430 Mismatch repair
C1X05_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_04405
Enzymes [BR:
lfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1X05_04405
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1X05_04405
MMR (mismatch excision repair)
Other MMR factors
C1X05_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
PhoH
AAA_19
SLFN-g3_helicase
Viral_helicase1
DEAD
AAA_16
ResIII
NACHT
Motif
Other DBs
NCBI-ProteinID:
AUS08141
LinkDB
All DBs
Position
845952..848285
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AA seq
777 aa
AA seq
DB search
MSIGKEEWQLEERRLQHVLTEMNEAISELSKQLSTQGEDLRIWRGEFWEDVTVNMATAED
ALETVASITQQARVMSEQERRQERDRRRFHVLKRMVKSPYFGRVDLTEAGETDKEEIYIG
IASYFDEKTDAHLVYDWRAPIANMYYDGMPGPVEYETPMGTVQGTMHLKRQYLIKDGKLL
SAFDMDAVIGDTILKEVLGQRSDTQMKNIVATIQAEQNRIIRDDRSKAVFVQGAAGSGKT
SVALQRIAYLLYKHRSWLSHSQVLLFSPNPVFMSYVSNVLPELGEENIKQTTFQKYAEHR
LGNAFRIEDAFDQLEHVLTHESDPSLPTRMSGIWYKSSIRFFHLLQGYKQWLEQGGMQFR
DIVLNGRVLVSREQMEERFYTHAPDAKLASRVQMMRAWLLDELERLAEQFIWDDWVGEEV
EFLEKEDYYQAYKSSIWGDPDPGEHHKAESTLRKKVVRQRFAPVRKQVKQLAFVDVYGVY
QQLFVEGMVERFAKREDIPTDWPNICAYTRRRFQEGTIPYEDITPLLYLQELIYGVRRYM
DIRYVLIDEAQDYSPFQLQVMRTLFPMAKLTVLGDWNQAILPHQTRQSGLEQMTGLFAEG
EVQQYEMNRSYRSTSQIVAFTRELLTDAKSVTPFNREGPLPVVRKLAAPEDLARKLHEDI
AAIRAEGYESLAVICKSHQECLQTYAQLQGHVPITLVDKEDQELASGVVILPVYLAKGIE
FDAVVIYNFSQENYSRVSDRKRLYTACTRAMHRLFLYVQGEVSPFLAQVGPNKFTWM
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtccattggcaaagaggaatggcaactggaagagcggcgtttgcagcatgtgctcaca
gaaatgaatgaggcgatttccgagctgagcaagcagctttctacccaaggcgaagatttg
cgcatctggcgtggggaattttgggaagatgtaaccgtgaacatggccactgcggaggac
gccttggaaacggtggcgagtatcactcagcaagcgcgggtgatgtctgaacaagaacga
agacaagagcgggatcgccgccgcttccatgtgctgaagcgcatggtgaaatctccatat
tttggacgggtggatttaaccgaagcgggagaaaccgacaaggaagagatttatatcggc
atcgcttcgtattttgatgaaaagacggatgcccatttagtttacgattggcgggccccg
attgccaacatgtattatgacgggatgccggggccggtcgaatatgagacgccgatgggg
acagttcagggaacgatgcacttaaaacggcaatacctgatcaaagacggcaagctgttg
tcggcatttgacatggatgcggttatcggcgataccattctcaaagaagtgttaggtcaa
cgatccgacacacagatgaaaaatatcgtcgcgacgatccaagcggagcagaaccgcatc
atccgcgacgaccgcagtaaggcggtgtttgtgcaaggggctgcgggaagcggcaaaaca
tcagttgccctacaacggatcgcttatttgctttataagcaccgctcttggctatcccac
tcgcaagtgcttctgttttcacccaatccggtctttatgagctatgtctccaatgttttg
ccggagttgggagaagaaaatatcaagcagacgacgtttcaaaagtatgcagaacaccgg
ttggggaatgcgtttcgcatcgaagacgcatttgaccagctggaacatgtgctcacccat
gaatccgatccatcactacccacccgcatgagtgggatttggtataagtcttctattcgc
tttttccacttgttgcaagggtacaaacaatggttggagcaaggcggtatgcaatttcgg
gatatcgtgctgaatggtcgggtgctggtatcccgtgaacagatggaagagcgattttac
acgcatgcccccgatgccaaattagccagccgggtgcagatgatgcgcgcctggttgtta
gatgaattggagcggctggcggaacaattcatctgggacgattgggtaggagaggaagtc
gaattcctcgaaaaggaagattattatcaagcgtacaagtccagcatctggggcgaccct
gatccgggagagcaccacaaggcagaatcgaccttgcgcaagaaagtggttcgtcagcgg
tttgcgccagttcgcaaacaggtaaagcaactcgcgtttgtcgatgtatatggagtgtac
caacagctctttgtagaaggcatggtggagcgctttgcgaaaagggaggatatccccacg
gattggccgaacatttgcgcatatacgcgacgccgctttcaagaaggcaccattccgtat
gaggatatcacaccactcctgtatttgcaggaattgatttacggcgtccgccggtatatg
gatatccggtatgtgctaatcgatgaggcgcaagactattcgccgtttcaattgcaagtg
atgcgaaccctgttcccgatggccaagctgacggtcttgggggattggaaccaagccatc
ctgccgcaccaaacgcgtcaatcaggattggagcagatgacaggcttatttgcagaaggg
gaagtccagcaatacgagatgaaccgcagctatcggtccacttcgcaaattgtcgcgttc
acccgtgaattgttgactgatgctaaatccgtgacgccgtttaatcgggaagggccgttg
ccggtggtgcggaagttggcggcaccggaggacttggcgcgcaaactgcatgaagatatc
gcggccatccgtgctgagggatatgaatcgctggccgtcatttgcaaaagccatcaagaa
tgcctgcaaacgtatgcgcaattgcaagggcacgtgccgatcactttggttgataaagaa
gaccaggagttggcatccggtgtggtgatccttccggtgtacctagccaaaggcattgaa
ttcgacgcggtggtgatttacaacttttcgcaggagaattacagcagagtaagcgaccgg
aaacgtttgtacacggcttgcacacgggccatgcaccggctattcctctatgtgcaggga
gaagtttccccgtttttggcccaagtgggcccaaacaaattcacctggatgtga
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