KEGG   Laceyella sacchari: C1X05_09580
Entry
C1X05_09580       CDS       T05304                                 
Name
(GenBank) ATP-dependent helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lfb  Laceyella sacchari
Pathway
lfb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lfb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C1X05_09580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lfb03019]
    C1X05_09580
   03009 Ribosome biogenesis [BR:lfb03009]
    C1X05_09580
Enzymes [BR:lfb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     C1X05_09580
Messenger RNA biogenesis [BR:lfb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C1X05_09580
Ribosome biogenesis [BR:lfb03009]
 Prokaryotic type
  rRNA helicases
   C1X05_09580
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 Helicase_RecD DUF7006 MukF_M
Other DBs
NCBI-ProteinID: AUS09073
LinkDB
Position
complement(1904729..1906312)
AA seq 527 aa
MSRFDQFALSKEILKGIQDIGFEEASPIQAECIPAVLRGEDVIGQAQTGTGKTAAFGIPV
LERIDTSHQAVQAMILAPTRELAIQVSEEMRRIGRPKRVKTLPIYGGQAIGRQIKALQQG
VHVVIGTPGRLLDHLRRGTIDTSSVEIMVLDEADEMLDMGFIDDIEAVFQYLPKQRQLLL
FSATMPTTIRQLAQKYMRKPKYITVNRGEVTVPVIKQVYYRVLENHKIDALCRILDSEEV
DLSIVFCRTKKGVDELTDALQARGYLAGGLHGDLAQQQRDRVMNAFRQGEVELLVATDVA
ARGIDVGSVSHVINFDIPQDVESYVHRIGRTGRAGRKGFALTLVTPREMKQLRTIEQETG
VKLRARELPSLEEVAAKQQQSWMGQIEEIVKSDADLSLFEEMIEQMNEKLSAEKVAAAAM
YLAFSERFVKNIDATYHFGETGASPGMVRFFINVGRNANLNPQELAKAIAEHAGIGLRQV
GKINIYDRFSFVEVPEDVAPFVYEALRQSKINGARVNMEPARPRNKG
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgagtcgttttgaccaatttgcgttaagcaaagaaattttaaaaggcattcaagatatt
ggctttgaggaagcctccccgatccaagcggagtgcattcccgcagtgttgcgcggggaa
gatgtgatcgggcaagcccaaaccggtaccggaaagactgcggcattcgggattccggtg
ttggaacggatcgataccagtcatcaagcggtgcaagcgatgatattggcgccgacccgc
gaattggcgatccaagtctctgaagaaatgcgtcggattggccggcccaagcgggtgaag
acgttgccgatttacggaggccaagcgattggcagacagattaaagcgttgcagcaaggg
gttcatgtggttatcggcacccccggccgtttgctcgaccatctgcgccgcggaacgatt
gacacctccagtgtagagattatggtgttggatgaagccgatgaaatgttggacatgggt
ttcatcgacgacattgaagcggtgttccaatacctgcccaagcaacggcaattgttgctc
ttctcggcgacgatgccgacaacgatccggcaattggcgcaaaaatatatgcgcaaaccc
aagtatattactgtgaatcgcggggaagtgacagttccggttatcaagcaagtatactat
cgcgtgttggaaaaccataagatcgatgctttgtgccggattttggacagtgaggaagtc
gatttgtccattgtgttctgccgtaccaaaaaaggagtcgatgaactgactgacgcgctc
caggctagagggtatctcgcaggcggcctgcatggggatttggcacagcaacagcgtgac
cgagtgatgaacgcgttccgccagggagaagttgaattgttggttgcgaccgacgtagcc
gcccgcggcatcgatgtgggtagcgtttcccatgtgatcaatttcgacatcccgcaagat
gtggagagctatgtgcaccgcatcggacggacgggacgtgcgggccgcaaagggtttgct
ctcacgcttgtcacaccgcgggaaatgaagcaattgcgcaccattgaacaggagacaggc
gttaaactgcgggcgcgggagttgcccagcttggaagaagtggccgcgaagcaacaacaa
agctggatgggtcaaatcgaagagattgtgaaatcagatgcggatctctcgttgtttgaa
gaaatgatcgaacagatgaatgagaagctttctgcggagaaagtagctgctgcggccatg
tacctagctttctcggagcggtttgtcaagaatatcgatgcaacctaccactttggggaa
acaggtgcttcgcccgggatggtacgcttcttcatcaatgtaggacgcaatgccaatctg
aatccgcaagagctggctaaagcgatcgctgaacatgcggggattggcctacggcaagta
ggtaagatcaacatttatgatcgcttctcttttgtagaagtgccggaggatgtggcgcca
ttcgtttatgaagcgttgcgccaatccaaaatcaacggggcccgtgttaacatggaaccg
gcaagaccgcgcaataaaggataa

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