Laceyella sacchari: C1X05_09580
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Entry
C1X05_09580 CDS
T05304
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1X05_09580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfb03019
]
C1X05_09580
03009 Ribosome biogenesis [BR:
lfb03009
]
C1X05_09580
Enzymes [BR:
lfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1X05_09580
Messenger RNA biogenesis [BR:
lfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1X05_09580
Ribosome biogenesis [BR:
lfb03009
]
Prokaryotic type
rRNA helicases
C1X05_09580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
Helicase_RecD
DUF7006
MukF_M
Motif
Other DBs
NCBI-ProteinID:
AUS09073
LinkDB
All DBs
Position
complement(1904729..1906312)
Genome browser
AA seq
527 aa
AA seq
DB search
MSRFDQFALSKEILKGIQDIGFEEASPIQAECIPAVLRGEDVIGQAQTGTGKTAAFGIPV
LERIDTSHQAVQAMILAPTRELAIQVSEEMRRIGRPKRVKTLPIYGGQAIGRQIKALQQG
VHVVIGTPGRLLDHLRRGTIDTSSVEIMVLDEADEMLDMGFIDDIEAVFQYLPKQRQLLL
FSATMPTTIRQLAQKYMRKPKYITVNRGEVTVPVIKQVYYRVLENHKIDALCRILDSEEV
DLSIVFCRTKKGVDELTDALQARGYLAGGLHGDLAQQQRDRVMNAFRQGEVELLVATDVA
ARGIDVGSVSHVINFDIPQDVESYVHRIGRTGRAGRKGFALTLVTPREMKQLRTIEQETG
VKLRARELPSLEEVAAKQQQSWMGQIEEIVKSDADLSLFEEMIEQMNEKLSAEKVAAAAM
YLAFSERFVKNIDATYHFGETGASPGMVRFFINVGRNANLNPQELAKAIAEHAGIGLRQV
GKINIYDRFSFVEVPEDVAPFVYEALRQSKINGARVNMEPARPRNKG
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttttgaccaatttgcgttaagcaaagaaattttaaaaggcattcaagatatt
ggctttgaggaagcctccccgatccaagcggagtgcattcccgcagtgttgcgcggggaa
gatgtgatcgggcaagcccaaaccggtaccggaaagactgcggcattcgggattccggtg
ttggaacggatcgataccagtcatcaagcggtgcaagcgatgatattggcgccgacccgc
gaattggcgatccaagtctctgaagaaatgcgtcggattggccggcccaagcgggtgaag
acgttgccgatttacggaggccaagcgattggcagacagattaaagcgttgcagcaaggg
gttcatgtggttatcggcacccccggccgtttgctcgaccatctgcgccgcggaacgatt
gacacctccagtgtagagattatggtgttggatgaagccgatgaaatgttggacatgggt
ttcatcgacgacattgaagcggtgttccaatacctgcccaagcaacggcaattgttgctc
ttctcggcgacgatgccgacaacgatccggcaattggcgcaaaaatatatgcgcaaaccc
aagtatattactgtgaatcgcggggaagtgacagttccggttatcaagcaagtatactat
cgcgtgttggaaaaccataagatcgatgctttgtgccggattttggacagtgaggaagtc
gatttgtccattgtgttctgccgtaccaaaaaaggagtcgatgaactgactgacgcgctc
caggctagagggtatctcgcaggcggcctgcatggggatttggcacagcaacagcgtgac
cgagtgatgaacgcgttccgccagggagaagttgaattgttggttgcgaccgacgtagcc
gcccgcggcatcgatgtgggtagcgtttcccatgtgatcaatttcgacatcccgcaagat
gtggagagctatgtgcaccgcatcggacggacgggacgtgcgggccgcaaagggtttgct
ctcacgcttgtcacaccgcgggaaatgaagcaattgcgcaccattgaacaggagacaggc
gttaaactgcgggcgcgggagttgcccagcttggaagaagtggccgcgaagcaacaacaa
agctggatgggtcaaatcgaagagattgtgaaatcagatgcggatctctcgttgtttgaa
gaaatgatcgaacagatgaatgagaagctttctgcggagaaagtagctgctgcggccatg
tacctagctttctcggagcggtttgtcaagaatatcgatgcaacctaccactttggggaa
acaggtgcttcgcccgggatggtacgcttcttcatcaatgtaggacgcaatgccaatctg
aatccgcaagagctggctaaagcgatcgctgaacatgcggggattggcctacggcaagta
ggtaagatcaacatttatgatcgcttctcttttgtagaagtgccggaggatgtggcgcca
ttcgtttatgaagcgttgcgccaatccaaaatcaacggggcccgtgttaacatggaaccg
gcaagaccgcgcaataaaggataa
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