Laceyella sacchari: C1X05_11885
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Entry
C1X05_11885 CDS
T05304
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lfb
Laceyella sacchari
Pathway
lfb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C1X05_11885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfb03021
]
C1X05_11885
Transcription machinery [BR:
lfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C1X05_11885
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_10
Exonuc_VII_L
HTH_20
ArlS_N
Motif
Other DBs
NCBI-ProteinID:
AUS09443
LinkDB
All DBs
Position
complement(2426444..2427568)
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AA seq
374 aa
AA seq
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MAKEQNVDTEMELTLDQVKEQLVEGGKKQGVVTYKTIMERLAPFDQDSQQIDDFFEQLSE
QGIEVINEENDDEFESPDDVEMEEDDSYLDEDLSVPPGVKINDPVRMYLKEIGRVPLLTA
EEEVELAKRIEHGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP
SPEEIAKEMGLSPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIPDDDAQAPADAAAYE
LLKEQLKEVLDTLSEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaaagaacaaaatgtggatactgagatggaattgacgctcgaccaagtgaaggag
cagcttgttgagggcggtaaaaagcagggtgtggtcacctataagacgattatggagaga
ttggctccgtttgaccaagattcccagcagatcgatgacttctttgagcaattgagtgag
cagggaattgaagtgatcaacgaagagaatgatgatgagtttgaaagtccagacgacgtg
gaaatggaagaggacgactcttatcttgacgaagatttgagtgtgcctccaggggtgaaa
atcaacgatccggtgcgcatgtatctaaaggagattggacgcgtgcccctgttgaccgct
gaagaggaagtggaattggcaaaacggatcgagcatggagatgaagaggccaagcgcagg
cttgccgaagcgaacttgcgtctggtggttagcattgccaaacggtatgttgggcgcggt
atgctctttctcgatttgatccaagaaggaaacatgggtttaatcaaagccgtagaaaag
tttgatttccgcaaaggatttaagttcagtacttatgccacttggtggattcgccaagcg
atcacccgggcgattgccgaccaagcgcgcacgatccggattcccgtgcatatggtggaa
acgattaacaaactgattcgggtgtcaagacaattgttacaagagttagggcgcgaaccc
tcccctgaagagattgctaaagaaatgggcctaagtccggaaaaagtacgtgaaatcatg
aaaatcgcccaagaacccgtatcgttggagacaccgatcggtgaagaggacgattcccat
ttgggtgacttcattccagatgatgatgcgcaagcgcccgcggatgctgcggcctacgaa
ttgttaaaagaacaattgaaagaagttcttgatacgctgtccgaacgggaagagaatgtt
ctgcgactgcgttttggtttggatgatggacgcacccgcactttggaggaagtgggcaaa
gtgtttggtgttacccgtgagcgcattcgtcagattgaagcgaaagcgttgcgcaagttg
cgccatcccagccgcagcaaacgcttgaaggacttcttggaataa
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