Laceyella sacchari: C1X05_14040
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Entry
C1X05_14040 CDS
T05304
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03420
Nucleotide excision repair
lfb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1X05_14040 (pcrA)
03430 Mismatch repair
C1X05_14040 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_14040 (pcrA)
Enzymes [BR:
lfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1X05_14040 (pcrA)
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1X05_14040 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
C1X05_14040 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
ResIII
FR47
Motif
Other DBs
NCBI-ProteinID:
AUS10508
LinkDB
All DBs
Position
complement(2842772..2844907)
Genome browser
AA seq
711 aa
AA seq
DB search
MQKQAVETTDGPVQIIAGAGSGKTRVLTHRVAYLLAEKGIHPWNVLAITFTNKAAREMKE
RIGQLVGPMAEEIWISTFHSMCVRMLRRDIDRLGYSRNFTILDTSDQLTVIKQVLKEQNL
DPKKFEPRTLLGKISHAKNMLREPGEMKAHAQTFMDEVAADVYEKYQDKLRTNESLDFDD
LLMVTVKLLRTQPEVKDYYQRKFQFIHVDEYQDTNHVQYILTKMLAEKHQNLCVVGDSDQ
SIYRFRGADISNILNFERDYPQATVIKLEQNYRSTKKILAAANHVIAHNTERKPKELWTD
NDEGEMLHLFEAGTEHEEAYYVAEHILQGRKEGQPYKNFAVLYRTNAQSRVLEEVMMKAN
IPYSIVGGIKFYERKEIKDVLAYLRLIVNPHDDLSLTRIINVPKRGIGAATLDKIAGYAR
EHGLSLFGALLEMEEIGLTQRTLKPLSEFVDLVRHLHAMIEYLSAVEITEEVLKRSGYRE
ELKRENSLEAASRLENIDEFLSVAQEFEKHNEDKSLVAFLTDLALISDLDALGDEQEEAD
KGDSVVLMTLHSAKGLEFPTVFLVGMEEGIFPHMRSLDDEDEMEEERRLAYVGITRAEKV
LHLTRARTRTIYGQTTSYLPSRFLKEIPVELVEEVGSRQSASNATPRRVVRPTPNVVADW
RVGDKAEHAKWGLGTVVKVQGEGEDLELNIAFPAPIGVKKLLAKYAPIKKA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcaggccgtggaaacaaccgacgggccggttcagatcattgcgggtgcgggc
agcggcaagacccgcgtgctgacacatcgcgtggcgtatttgttagcggagaaagggatt
catccctggaatgtgttggcgatcacatttacgaataaagcggcgcgggagatgaaggag
cgcatcggccagttggtaggcccgatggcagaagaaatctggatctccacgtttcactcc
atgtgcgtccgcatgttgcgcagagacatcgacaggctgggttattcccgcaatttcacc
atcctggacacatcagaccagttgacggtgatcaaacaggtgttaaaagagcaaaacctt
gatcccaagaagtttgagccgcgcactttgctgggcaagatcagccatgccaaaaatatg
ttgcgcgaaccgggcgaaatgaaggcacatgcccagacgtttatggatgaagtagcggct
gacgtgtacgagaaatatcaagacaaactgcgcaccaacgaatcgctcgattttgatgac
ttgttgatggtcacggtgaagttgttgcgaacccaacccgaagtaaaagattattaccag
cggaagtttcaattcatccatgttgatgaataccaagacaccaaccatgtgcagtacatc
ctcaccaagatgctggccgaaaaacaccaaaacctttgcgtcgtgggcgattcggaccag
tccatttatcggttccgcggtgcggatatcagcaatatcctcaattttgaacgcgattat
ccccaagcgaccgtgatcaaattggaacaaaactaccgctcaaccaagaagatcttggcc
gccgctaaccatgtcattgcccacaacaccgagcgcaagccgaaagagttgtggacggac
aatgacgagggggaaatgctccacctgtttgaggcggggacggagcatgaggaagcgtac
tatgtggctgagcatatcttacagggccgcaaagaagggcaaccttataaaaacttcgcc
gttctatatcgcaccaacgcccagtcgcgggtgttggaggaagtgatgatgaaggcgaac
atcccctattcgattgtcggtggaatcaaattctatgagcgcaaagagatcaaagacgtg
ctcgcttatctacgcctcatcgtcaatccgcatgacgatctgagcttgacccggatcatc
aatgtgcccaagcgcggcatcggcgcagcgacgttggacaagattgccggatatgcccgc
gagcacggattgtcgctgtttggtgctttgttggagatggaggaaatcggcctgacgcaa
cgcacattgaagccgctcagcgaatttgtggacttggtgcgccacctgcacgccatgatc
gagtacttgtcggcggtggagatcacggaagaggtcttgaagcgtagcggttatcgcgag
gaattgaaacgggaaaacagcttggaggccgctagccggttggagaacatcgacgagttc
ctgtcggtggcccaagaatttgagaagcacaatgaagataagtcgctggttgcctttttg
accgatttggcactcatctccgatttggatgcattgggagacgagcaggaagaggcggac
aagggggattcagtggtgctgatgaccttgcacagtgccaaggggttggaatttcctacc
gtctttttggtaggtatggaagaggggatcttcccacacatgcgctcgctggatgacgaa
gacgagatggaagaagaacgccggcttgcctatgtgggcatcacgcgcgcggagaaagtg
ttacatctgacgcgtgcccggacgcgaaccatctatggacaaaccacctcctacttacct
tctcgttttttgaaggagattccggtggagttggtggaagaagttggtagcagacaatcg
gccagcaacgccaccccacgcagagtcgtgcggccgacccccaatgtggtggccgattgg
cgggtgggagataaagccgaacacgccaagtggggcctaggtacagtggtaaaagtgcaa
ggggaaggcgaggacttggaattgaacatcgcttttccggcgccgatcggcgtgaaaaaa
ctgttggccaagtacgccccgatcaaaaaagcgtag
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