Laceyella sacchari: C1X05_15225
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Entry
C1X05_15225 CDS
T05304
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1X05_15225 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfb03019
]
C1X05_15225 (rnr)
03016 Transfer RNA biogenesis [BR:
lfb03016
]
C1X05_15225 (rnr)
Enzymes [BR:
lfb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C1X05_15225 (rnr)
Messenger RNA biogenesis [BR:
lfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1X05_15225 (rnr)
Transfer RNA biogenesis [BR:
lfb03016
]
Prokaryotic type
tRNA degradation factors
C1X05_15225 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
CSD
OB_HELZ2
RNase_II_C_S1
DUF1918
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AUS10520
LinkDB
All DBs
Position
complement(3083163..3085499)
Genome browser
AA seq
778 aa
AA seq
DB search
MLTEQQIRQFMLEQAYKPLTLAELIDQFQVAEEEREAFAELLETMEADGKIVRTRTQRYG
VPERFNLIRGTLQGSSKGFGFVIPDTPGKQDIYIHLNDMNGAMDGDLVLARIHKSKTESR
RPEGEIVRVLKRKRDKIVGTFSRLSSHFGFVIPDDKRIAADIFIAPELQMDARDGQKVVV
KLHHITGRHSAEGEIIEILGHRNDPGVDIVSIIRKHGLPEAFPEAVIAEAEAIPETINEE
DLKGRRDLRGRNMVTIDGEDAKDLDDAVSVERLPNGNVRLGVHIADVSYYVREGSALDRE
AYERGCSVYLVDRVIPMLPKRLSNGICSLNPQVDRLTMTCDMEIDPTGDVVDYEIYPSVI
KTNERMTYSDVKKIIVDEDPELIERYRPLVDDFRLMADLAMLLRKRRLSRGAIDFNFTEA
KIIVDEKGKPVDVVKRPRTIAEQLIEEFMLKANETVAEHYFNLQVPFVYRIHENPDAEKL
KNFYEFITSFGYSVKGKPDQVRPHALQSLLEKISGKPEEHVISTVLLRSMKQAKYATENV
GHFGLAAPFYSHFTSPIRRYPDLLIHRVIREIVEKGALTVERIDELNAYLIDAAQQSSIR
ERVAVDAERETNDLKAAEFMMDKIGEEYEGIISSVTSFGIFVELENTIEGLIHVSFLTDD
YYRYDESHYCLIGERTGRIFRIGDRVRIKVSGVNIDERKVDFELLEHFSDERFERPAKGK
KKKFKRNKDADAARATKGKKGKFYEVKWEDPAAKKNGDSKKKGKKKKKKTYRNKSKKK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgttgactgaacagcagattcggcagtttatgctggaacaagcgtacaaaccgctcacc
ctggctgaattgatcgatcaattccaggtggcggaagaggagcgggaggcgtttgccgag
ctcttagagaccatggaggcggatgggaaaatcgttcgcacgcgcacgcagcggtacggc
gtgccggagcggtttaacctgatccgcggcaccttgcagggcagttccaagggatttggc
tttgtcatcccggatacgcccggcaaacaggatatttatatccatctcaatgatatgaac
ggcgcgatggatggcgatttggttttggcgcgaattcacaagagcaagacggagagccgc
cgtccggaaggggagatcgtccgtgttctgaagcggaaacgggacaaaatcgtcgggacg
ttttctcggttgtcttcgcacttcggcttcgtgattccggacgacaaacgcattgccgct
gatatcttcattgctcccgaattgcagatggatgcccgtgatggccagaaagtcgtggtg
aaactacaccatatcaccggacgtcattcggccgagggggagatcatcgaaattttaggt
caccgcaatgatcccggcgttgacattgtgtccatcatccgcaagcatggattgccggaa
gcgttcccagaagcggtgatcgctgaagcggaggccataccggaaacgatcaacgaagaa
gacctgaaggggcggcgcgacctgcgcgggcgaaacatggtgaccattgacggcgaagac
gccaaagatttggacgatgctgtgtcagtggagcggttgcccaatggtaatgtgcgttta
ggcgtccatatcgccgatgtcagctactatgtccgggaagggtctgcactggatcgggaa
gcatatgagcggggatgcagtgtctacctcgttgaccgggtgattccgatgttgcccaag
cgcctttccaatggcatttgcagcttgaacccacaagtggaccgcctaaccatgacttgt
gacatggaaattgaccccacaggcgatgtggtcgactacgaaatctaccccagcgtcatc
aaaaccaatgagcggatgacttattccgacgtcaagaagattatcgtcgacgaagatccg
gaattgatcgagcgttaccggccgctcgtcgatgatttccgcctgatggctgacttggcg
atgcttctgcgcaagcggcgcctaagtcggggagcgattgactttaatttcaccgaagcc
aaaatcattgtcgatgaaaaaggtaagccggtggatgtggtgaaacggccccgcaccatt
gccgagcaactgattgaagagttcatgctcaaagccaatgagacagtggcggaacattat
tttaatctgcaagtgccgtttgtttatcggattcacgagaatcccgatgctgagaaattg
aagaatttctatgagtttatcaccagcttcggttactcggtaaaaggtaagccggatcaa
gtccgcccgcatgccttgcagagtttgctggaaaaaatatccggaaagccggaagagcat
gtgatcagcaccgtattgttgcgctcgatgaagcaagctaagtatgcgacagaaaacgtg
gggcattttggcctggcggcgcccttttattcgcactttacgtcgcccatccgccgttat
cccgacctgttgattcatcgcgtcatccgcgaaatcgtggagaaaggggcgttaaccgtc
gagcggatcgacgaattaaacgcctatttgattgacgcagcccaacaatcctccatccgc
gagcgggtcgctgtcgacgccgagcgggagaccaacgatctcaaagcggctgagttcatg
atggataaaatcggggaagagtatgaaggcatcatctccagcgtcacctcgtttgggatc
ttcgtggagttggagaacacgattgaaggattgatccacgtcagcttcctgactgacgat
tattaccgttacgatgaatcccattactgcctgatcggggagcgaaccggacgcatcttc
cggattggagatcgcgtgcgtatcaaggtcagcggtgttaacatcgacgaacgcaaagtg
gacttcgaactcttggagcacttctccgatgagcgctttgaacgcccagccaaaggaaag
aagaagaaatttaagcgcaacaaagatgccgacgccgctcgcgccaccaaaggcaaaaaa
ggcaaattctatgaagtaaaatgggaagatcccgccgccaagaaaaacggagacagcaag
aaaaaaggaaaaaagaaaaagaagaaaacctatcgcaacaagagcaagaagaaatga
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