Laceyella sacchari: C1X05_15530
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Entry
C1X05_15530 CDS
T05304
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
lfb
Laceyella sacchari
Pathway
lfb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1X05_15530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_15530
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1X05_15530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1X05_15530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_19
Phage_Mu_Gp48
AAA_22
UFL1
AAA_16
HEM4
AAA_5
UB2H
AAA_7
Thg1C
Motif
Other DBs
NCBI-ProteinID:
AUS10097
LinkDB
All DBs
Position
complement(3143683..3145662)
Genome browser
AA seq
659 aa
AA seq
DB search
MEKRFQLVSEFQPQGDQPQAIQKLVQGIEQGERYQTLLGATGTGKTFTIAQTINRVNKPT
LVIAHNKTLAAQLCGELKEFFPHNAVEYFVSYYDYYQPEAYIPATDTYIEKDASINDEID
KLRHSATSALFERSDVIIVSSVSCIYGLGSPTEYKEMVLSLRVGMEKERNEVLRKLVDIQ
YERNDINFTRGTFRVRGDVVEIFPASRSEQAVRVEFFGDEIERIREIDVLTGEILGDREH
VAIFPASHYVTRQAQLERALTSIEAELEERLKELRDAGKLLEAQRLEQRTRYDMEMIREV
GFCSGIENYSRHLVGKQPGEAPYTLLDFFPDDYLIIVDESHVTIPQINGMYNGDQARKTM
LVDHGFRLPSAKDNRPLKFAEFEEKINQIVFVSATPGPYELEKCPTVVEQIIRPTGLLDP
VIHIHPIQGQIDHLIGEINKRIAEDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIK
TIERMQILRDLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNARGEVIMYADKITDSMRRAIEETERRREIQMKYNEEHGITPQTIRKKVHDVIEATK
VAEDQAEYQVDKEMKKLSKGERLKLIEQMEKEMKQAAKDLNFERAAELRDLILELKAEG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggagaagagatttcaactggtttcagagtttcaaccgcaaggtgaccagccacaagcg
atacaaaagctggtgcaggggattgaacagggtgagcgctatcaaacattgttgggggcc
accggaacgggaaagacattcaccatcgcacaaaccatcaaccgagtgaacaaaccgacg
ctggtgattgcgcataataaaaccttggcggcgcaattgtgtggggagttaaaggagttt
ttccctcacaacgccgtcgagtattttgtgagttattatgattattatcaaccggaggcc
tatatcccagccaccgatacgtatattgaaaaggatgcttccatcaacgatgagatcgac
aagttacgccactcggctacgagcgcgttgtttgagcgttccgatgtgatcatcgtgtcc
agtgtttcttgtatctacggtttgggttcgccgaccgaatacaaggaaatggtgttgtcg
cttcgggtggggatggaaaaagagcggaatgaagtattgcgcaagctggtcgatatccag
tacgagcggaatgacatcaatttcacgcgcggcacgttccgcgtgcgcggcgatgtagtt
gaaatcttcccagcctctcgcagtgaacaggcggtacgggtcgaattttttggtgacgag
attgaacggattcgcgaaatcgacgtgctgacgggggaaatcctcggtgatcgggagcat
gtcgccatttttccggcttcccactatgtgacgagacaagcccaattggagcgggctctc
acttcgattgaggctgaattggaagagcggcttaaagagttgcgggatgcgggcaaactg
ctggaagcccagcgccttgagcaacggacgcgttatgatatggaaatgattcgtgaagta
ggtttttgttctgggattgaaaactattcgcgacacctagtggggaaacaaccaggggaa
gccccttacaccttgttggatttttttcctgatgattacctgatcatcgtagacgaatcg
catgtgactatcccacaaatcaacggaatgtacaatggggaccaagcacgcaaaaccatg
ttggtggatcacggattccgattgccgtcggcgaaggataaccgcccgctcaagtttgcc
gagtttgaagagaaaatcaaccagatcgtgttcgtttcggcgaccccggggccgtatgaa
ttggaaaaatgccccacggtggtcgaacagatcatccgtccgaccggtttgctagacccc
gtgattcacattcatccgattcaggggcaaatcgaccacctgatcggagagatcaacaag
cgaattgccgaagacgagcgggtattggtaaccaccttgaccaagaagatggcagaggac
ttgaccgattatctcaaagaaattgggatcaaggtgcgttatttacattcagacatcaag
acgattgagcggatgcaaattctgcgcgatttgcgtttgggtgaatttgatgtgctgatc
gggatcaacctgttaagagaagggttggacttgccagaagtttcattagtcgccattttg
gacgccgacaaagaagggttcctgcgctcagaacgctccctgatccagacgattggccgg
gcggcgcgaaatgccagaggggaagtgatcatgtatgccgataagatcacagactccatg
cggcgagcaatagaggaaaccgaacgtcggcgcgagattcagatgaagtacaacgaggag
cacggcattacgccgcagacgattcggaaaaaggtgcatgatgtcattgaagcgaccaaa
gtggctgaagaccaagcagaataccaagtggacaaggaaatgaagaaattgtccaagggt
gagcgactgaagctgatcgagcagatggagaaagaaatgaagcaagctgccaaggatctc
aatttcgaacgagcggccgaattgcgcgacctcatcttggagcttaaagcggagggttaa
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