Leptospirillum ferrooxidans: LFE_1378
Help
Entry
LFE_1378 CDS
T01809
Name
(GenBank) putative DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lfc
Leptospirillum ferrooxidans
Pathway
lfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFE_1378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfc03019
]
LFE_1378
Enzymes [BR:
lfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LFE_1378
Messenger RNA biogenesis [BR:
lfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LFE_1378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Sacchrp_dh_NADP
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAM07061
UniProt:
I0IP62
LinkDB
All DBs
Position
complement(1388422..1389735)
Genome browser
AA seq
437 aa
AA seq
DB search
MSFSALGLSEEIVRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPII
EILSRKNDKKEKGRRVPVKALILTPTRELAAQVEESVVEYGKHMKLSSTVIFGGVSINPQ
IQKLRTGVDILVATPGRLLDHVQQRTLDLSHVEILVLDEADRMLDMGFIRDIRKIISLLP
KTRQNLLFSATFSDEIKSLSSSILKDPILIEITPSGKPVEKVSQKIYLVDRDKKRAVLSK
LIKQHDWFQILVFTRTKHGANRLAEQLNKDGISSLAIHGNKSQGARTHALAEFKTGTLHV
LVATDIAARGIDISELPHVVNFDLPNVPEDYVHRIGRTARAGAEGEAISLVCIDEHKLLE
GIERLIKISLPREVVPGFEPDPNAKAEPIDNGQGRRGFSGRPKPSSRSPQKTSSGNDRSG
GGESRRSGSSEGRTRRG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttcagctcttggcctttccgaagaaattgtgcgcgctgttaccgaaaggggt
tatctgaccccgacaccgatccaggttgctgcgatcccggctgtattgtcgggaagggac
ctcatggccggagcccagactggaaccggaaaaacagcgggttttaccttgccaatcatt
gagatcctttccagaaaaaatgataaaaaggaaaaaggaagaagggttcccgtcaaggct
cttatcctgactcccacccgtgagcttgcggctcaggttgaggagtccgttgtcgagtac
gggaagcatatgaaactctcctcaaccgttatttttggcggtgtcagcatcaatccccag
attcagaaattaaggacgggagtggatattctggttgcgaccccggggcgtctcctcgac
catgtccagcaaagaacgctggatctctcgcatgtcgaaattctggttctcgatgaagcg
gaccgcatgctggatatgggttttatccgggatatccggaagatcatctctcttcttccg
aaaactcgacagaatcttctgttttcggcgacgttttcggatgagatcaagagtctttca
agcagtattttaaaggatccgattctcattgaaatcacccctagcggaaaaccggtcgag
aaggtgtcccaaaagatctacctcgtcgatcgcgacaagaagcgagcggttctttcaaag
ttgatcaagcagcatgattggtttcagatcctggtttttacgcgaacaaaacatggggcc
aaccgtttggcggaacagttgaataaagatggaatctcttcccttgcaatccatggcaac
aaaagtcagggagcgagaacacatgcccttgcggagttcaagaccggcacccttcatgtt
ctggtcgctacggacattgcggctcggggcatcgatatctcggaacttccgcatgtagtc
aactttgatcttccaaacgttccggaagattatgtccatcggattggacgcaccgcccgt
gctggtgccgaaggagaggccatatctcttgtctgtatcgatgagcacaagcttctggaa
ggaatcgagcgtctgatcaagatatctttaccgagggaggtggttccaggattcgagcca
gatccaaatgccaaagcggaacctatcgataatgggcagggaaggaggggtttctcgggt
cgcccgaagccttcgagtcgatctccccagaaaacttcctccggaaatgatcgctcggga
gggggtgagtccagacgatctggctcttcagagggaagaaccagaagggggtaa
DBGET
integrated database retrieval system
