Leptospirillum ferrooxidans: LFE_2000
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Entry
LFE_2000 CDS
T01809
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lfc
Leptospirillum ferrooxidans
Pathway
lfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFE_2000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfc03019
]
LFE_2000
Enzymes [BR:
lfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LFE_2000
Messenger RNA biogenesis [BR:
lfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LFE_2000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAM07675
UniProt:
I0IQX6
LinkDB
All DBs
Position
2043918..2045321
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AA seq
467 aa
AA seq
DB search
MFQNQSVEPTLSPVKNIEADEPVDQVTFADLGLAPEILKALNDIEHFVPTPIQAATIPLI
IEGRDILGIARTGTGKTGGFLLPALHRIYQTRTAKQGFRVLILSPTRELANQTFSAAMSY
SKYTRSRQILLVGGTDLRRQEMSLRKPWDIAVVTPGRLLDHLRRGNINLAHISMVIIDEA
DRMLDMGFFPDIQAIVAGLPQDRQSLLFSATLPPRIQELARSFQRDAAIIRLNSSEPSSP
QIEQEIVTVSHGSQKLGILKTILDSVKNHTGQTIVFTRTKRGAEELSISLSGEGYSTDAL
HGDKSQHVRNRVLAKFRKGDLKILVATDVAARGLDIEGITHVINYDLPQTAEDYVHRIGR
TGRAGRTGKAISFYHPADTDTMRSIERMTGEPIPRHPLSVPHPTSYRPRTGSSSGSRSGS
GRPSYGSGGGSDRSSRSGSGGRRTTGGGYRSSGPSSHQSSSFSRKDP
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaatcaatccgttgaacccacattatcccctgtcaaaaacattgaggcagac
gagcctgtcgatcaagtcactttcgccgatcttggtctggctccagaaatattgaaagca
ttgaatgatatcgagcattttgttcccaccccgattcaggcagccaccattcccctgatc
atcgaaggacgggacatactcggcatcgcccgaaccggaacaggaaaaaccggcgggttc
ctccttcctgcccttcaccggatttaccagacccgaacagcaaagcaaggcttccgggtt
ctcatcctttccccaacaagagagcttgcgaaccagactttctccgctgccatgtcctat
tccaaatatacccgctcccgtcagatcctcctcgtcggtggaacagatctccgacgtcag
gaaatgtctctcagaaaaccctgggacatcgcagtcgtgacacctggtcgcctcctcgac
caccttcgtcggggaaacatcaatcttgcccatatttccatggtgatcattgacgaagcc
gaccgtatgctcgacatgggctttttccctgacatccaggccattgtcgccggccttcca
caggatcggcagtctcttctattctcggcaacgcttccaccaaggatccaggaactcgca
agatccttccagagagacgctgcgatcatccgcttgaactcaagcgaaccgtcatccccc
cagatcgaacaggagattgtcacagtttcccacggatcccaaaaactgggcatcctgaaa
acaatcctggactcggtcaagaatcacacaggacagaccattgtcttcaccagaaccaag
cgcggagcggaagagctctccatctccctgagtggggaaggctactcgaccgacgccctc
catggggacaagtcgcagcatgtccggaatcgggttctcgccaagttcagaaaaggtgac
ctcaagattctggttgcaacggatgtggcagcccgtggtctcgacatcgagggcattacc
cacgtcatcaactatgacctcccgcaaaccgccgaagattatgtacacagaatcggacgg
accggccgggcaggacgcacaggaaaggccatttccttctaccatcctgccgacaccgac
acgatgagatcgatcgaacgcatgacgggtgaacccattcccagacaccccctctccgtt
ccccatccaacatcctatcgcccaagaacaggctcttcttccggttcgagatcaggatca
ggaaggccatcttatggatcgggcggaggttctgatcgctcttccagaagcggaagcggt
ggacgtcgcaccacaggaggcgggtaccgttcttcgggcccatcgtcccaccagtcttct
tctttcagcagaaaagacccctaa
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