Ligilactobacillus faecis: QFX10_09520
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Entry
QFX10_09520 CDS
T08999
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lfd
Ligilactobacillus faecis
Pathway
lfd03410
Base excision repair
lfd03430
Mismatch repair
lfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QFX10_09520 (recJ)
03430 Mismatch repair
QFX10_09520 (recJ)
03440 Homologous recombination
QFX10_09520 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfd03400
]
QFX10_09520 (recJ)
DNA repair and recombination proteins [BR:
lfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
QFX10_09520 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
QFX10_09520 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QFX10_09520 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
DUF881
Motif
Other DBs
NCBI-ProteinID:
WGN89268
LinkDB
All DBs
Position
complement(2091721..2094018)
Genome browser
AA seq
765 aa
AA seq
DB search
MITPKYEWKKQDLPEKENVDEIATELGLSPLVTEILVARGQDTVAKIKRFLEPTSESFYD
PYQLFDMQRAIERIQDAIVNEEHITVYGDYDVDGLTSTAIMYEALLQLGADVDYYIPDRF
QDGYGPNKEVYARLLEQGTELLVTVDNGVAGLEAITYAKEQGLDVIVTDHHELPAQLPPA
YAVIHPRHPKGDYPFADLSGAGVAFKMAQAMLEEIPEDFLDLAALGTIADLVSLTDENRA
LAKFGLVALENTLRPGLLALYELAGLNEKEITEQTVGFTLAPRLNAIGRMQHAQIGVELL
TTLDEERAQELAKKAQALNAKRQEIVEKITTEALAKVAKAPGHLVDVVAGTDWHEGVLGI
VASRLVEKTGRPAVVLNLANGEAKGSGRSVEAFHLFDALDGHREFLESFGGHHMACGVTV
LQTNIEKLQQILDTEAKHQKLDQAKAQALAIVSSLSLSEVDLNLLDELAKLAPFGTGNEL
PLFEINDHQVVSAKAIGKNNDHLRLELKNGATEITALAFGVKEELPELLQAPADIQFVAS
LAKNEWRGQVKPQLLIKDLSLAEKHAKVVIERKVKLTQEMFLRPVTYGFFNPQLAQKLRP
HLPALAQCLVFDKNLTTTDLDELVLVDLPANLTQLEFVLKRVRPKTMRVHFYTKKQEVLL
PTRAEFGKVYKLMQRYQKITFPDDLAALAKTCALEDDQALLILKVFFEAGFVTINKGILS
FNASAKAHRLEDTPSYQSQRAKQQVVATLLKSDEGTLKHWLSARS
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
ttgatcacgccaaaatatgaatggaaaaaacaagatctcccagaaaaagaaaatgtcgat
gaaatagcaactgaacttggactttctccgctagtgactgagatcttagtggctagagga
caagacactgtggctaagatcaaacgcttcttagaaccgacaagcgagagtttttatgat
ccatatcaattatttgatatgcaaagggcgatcgaacggatccaagatgcgatcgtcaat
gaagaacatatcacagtttatggtgattatgacgtagatggtctgacgagtactgcgatc
atgtatgaagcattacttcaattgggagcagatgttgattattatatccctgatcgcttc
caagatggttatggtcctaataaagaggtatatgctcgtctgctcgaacaaggcacagaa
ctattagtgactgttgataatggggtcgctgggcttgaagcgatcacgtatgctaaagaa
caaggcttagatgtgatcgtaactgatcaccacgagctcccagctcagcttccacctgct
tatgcggtgatccatccgcgtcatcctaaaggtgactatccttttgccgatctttctgga
gctggcgtcgcttttaaaatggctcaagcgatgttagaggagatcccagaagatttctta
gatctagctgccttaggaacgatcgctgatcttgtttctttaacagatgaaaatcgtgcg
ctagctaaatttgggctggttgctttagaaaatactttaaggcctggtttgttggcgctt
tacgaattggctggtctcaatgaaaaagagatcacagagcaaacagttggttttactttg
gcaccacgattgaatgcgatcggacggatgcaacatgctcagatcggagtcgaattattg
acgactttagatgaagagcgggcccaagagttagctaaaaaggcgcaagctttgaatgct
aaacgccaagaaatagttgaaaagatcacgacggaagctttagctaaagttgctaaagcg
ccaggacatctcgttgatgttgtggctggaactgattggcatgaaggagttttaggaatc
gttgcgagccgtttagttgaaaagacaggacgaccagcagtcgttttaaatctcgcaaac
ggagaagctaaaggttcaggtcgatcggtcgaagcttttcatctttttgatgctcttgac
ggacaccgagagtttttagaaagctttggtggacatcatatggcttgtggtgtgacggtt
ttacaaactaatattgaaaagttgcaacagatcttagataccgaagctaaacatcaaaaa
ttagatcaagctaaagcacaagccttggcgatcgttagttctttatctttaagcgaagtt
gatctgaatttgctcgatgaacttgctaagttagctccttttggaactgggaatgagttg
ccactttttgagatcaatgatcatcaagttgtaagtgctaaagcgatcggaaaaaataac
gatcatttacgcttggaattgaaaaatggagcaactgagatcacagcactagcgtttggc
gtcaaagaagaacttcctgagctcttacaagcgccagcagatatccaatttgtagcttct
cttgctaaaaacgagtggcgcggacaggtcaagcctcaacttttgatcaaagatcttagc
ttagctgagaaacatgcaaaagttgttatcgagcgcaaagtaaaattaacgcaggagatg
tttttacgtcctgtgacttatggtttctttaatccacaattggcacaaaaactccgccct
catttaccagctctagctcagtgccttgtttttgacaagaacttaacaacgactgaccta
gatgagttagttttagtggatctgccagctaatttgacccaattagagtttgttttaaaa
cgtgtccgtcctaaaactatgcgagttcatttttacactaaaaagcaagaagttttatta
ccgacacgagcagaatttggcaaagtctataaacttatgcaacgctaccaaaaaataacg
tttccagacgatcttgctgcgcttgctaagacgtgtgctttagaagacgatcaagcgcta
ttgatcttaaaggtgttttttgaggcgggttttgttacaataaacaagggtatcttgagc
ttcaatgctagtgctaaagcacatcgtttggaagatactccaagttaccaaagccaaagg
gctaagcaacaagtcgtagcgactttacttaagtcagatgaaggaacactcaaacattgg
ttgagtgcacgtagttaa
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