Limosilactobacillus fermentum IFO 3956: LAF_0036
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Entry
LAF_0036 CDS
T00699
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0036
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAF_0036
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LAF_0036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
DRE2_N
Motif
Other DBs
NCBI-ProteinID:
BAG26372
UniProt:
B2GEY3
LinkDB
All DBs
Position
40810..44547
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AA seq
1245 aa
AA seq
DB search
MATLQFVLGSASFDHQQVMLDRLAAQYQQAPNDTYLYLVPNHVKFTTEVAVLKGLKKRLK
QTGNYAQANVAVLSFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDLLKM
FRGESERQGFATEVTKQLVELQNANIQPADLAPDQETGIIKRALASQAGGGRASQSTVFT
DKMTVLYEIYRRFEAAVTTHVTAPDRSAMLLNHLEAADLSTTHVYLDRFAGEFSAQEQLI
VDALIQRAADTTVSLILDRDYRGRELPSQNNLYYRSAKQYQDLLNLATQQVGVDVLDPIV
LNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRVAELNRVATKIRQ
LVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATSPLATFTAALFKV
LKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTENYCLKFGKGGRS
WFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTATTGRELATKFYQF
LLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILGDQVAPTEQPGQL
VAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGATDDVMPEVKASE
GLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLYMSAPLMSSDDSE
LTLSPYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAPAVTMGNLIEVER
LSKDTGRKLTSAWRDVARALTRYDEGLTGRLNDIRDGQYAKNEAVPLQPELAARLYTTNR
QGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKSGTLNHDALAFFVQS
VIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANNSRVNLQLQVAKQLI
TTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDLTGAGLGEGAKVSLR
GRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYLNALQAANPGKQLLG
SLYLRLYVPTVDAGKEGTAEELKEHLYQGITINDDAVLAALDHGLGEKGATLLSIKKKSK
KDTSRFKVSADDQFSAKAGSNLVSPTDLKRLMDHNAELIKEAAVQILQGQNEIRPYRRQV
GTTAETGLAFSDFLDVSRFDQALDDYKEIELTDADVEAKFEQEEE
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccttacaatttgttttggggagtgcgtcctttgaccaccagcaagtgatgctc
gatcgcttggcggctcagtaccagcaagcacccaatgatacctacctttacttagtgccc
aaccacgttaagttcaccaccgaagtagccgttttaaaggggcttaaaaagcggttgaag
caaactggtaattacgcccaggctaacgtggcggtcctgtccttttcgcgcttggggtgg
tttttgtgtaaggacgaccccgattaccaaaagccccgcctttccaacgtggggatggcg
atggtggtcgccaaaatcattcgggaactcaaggcagaatcccccgacctcttgaagatg
tttcggggcgaaagcgaacgccagggctttgccacggaggtgaccaagcagctggtggaa
ctacaaaacgccaatattcaaccggccgacctggcgcccgatcaggaaaccgggattatt
aagcgggccctggctagtcaggcggggggtggccgggccagtcaatcgacggtctttacc
gacaagatgaccgtcctgtacgaaatttaccggcgctttgaggcggcggtcacgacccac
gtcacggcgccggaccggtcagcgatgctcttaaaccacctcgaagccgccgacctatca
acgacccacgtttaccttgatcgctttgccggtgaatttagcgcccaggaacagttgatt
gtcgacgccctgattcaacgggctgccgacaccacggtttctttgatcctcgaccgggat
taccggggacgggagttgccgagtcaaaacaacctctattaccgctcggccaagcagtac
caggacttattgaacctcgccactcagcaggtgggcgtggatgtgttagacccgattgtt
ttgaatcagccgaaccaacgacgggttagcgacgccttggtgggggtcgaagagtggatg
gaagcagacgcacgcttcgctctgccagacaggttgccggccccgaccgaccaagtaggc
tttttcaccgccccaacccgggtggccgaactcaaccgggtcgccaccaaaattcgccag
ctcgttgccaccggtcagtaccgctaccgggactttttagtggttacgaggcacctggac
ggctaccaaacgatgctagaaccgatctttagccgccaccaaattccggtcttcaacgat
aaccaacgcccaatggcgacctcgccgctagcgaccttcaccgccgccttgttcaaggtc
ttaaaggactactaccaagaagccgacgtgatggagttgttaaagaccggcctcttggtt
cccgagacgccggaagagctccaacaggaggggcgtgcgaagcgaaaccccaacaccttc
atgaccgccgtctaccggaccgaaaactactgcctgaagttcggcaagggggggcggtcg
tggtttgacgagcgaccgtggcgactggaaggagaacaaccagaaagcgatgcgctcaag
cgccaaaacgcccagattaactgggtcaaaaattacatcaaagacgaattggccccggcc
ctggccgacctacaaacggccactaccgggcgggagttagccaccaagttctaccagttc
ctcttggatcaaggggtccgtcaccaactttattcctgggcccaccaagcccaagaaagc
gggcagttaacccagctgcgcgacgttcagcaaatttggcagacctttggcaccctcttg
gacgagtacgtaaccatccttggcgaccaggtggccccgaccgagcagccgggacagttg
gtggccgagtttgccgacctcatgaacgccggttttaacgccgggcgctacgcccaaatc
ccgtcgactttggatcaagtgttggtttcggaaagcgggatgatccaggacaaccagcgc
aaggtcctcttcatcatgggggcgaccgatgacgtgatgccggaagtcaaggccagcgag
gggctcttatccgaccccgaccgggaacttttgaagcggggcttaaacgacgaccagttc
ctgcccatcagcgggaccgaccagatcaacaacgagcccttcttaaactacctgagcatg
ctgtcggtaaccgagcgcctctacatgagcgcccccctgatgagcagcgacgacagtgag
ttaaccctctccccgtacctgaagggcttggcccgtcacttcaaccagtgggatgaccaa
aacaacgccccgaccaccgacttgccagaccggccgaacccgcgggcaagcgaagacgac
gtgtggtcctttgtggcggcgccggccgtgacgatggggaacctgattgaagtggagcgc
ctgagtaaggacaccggccgtaagctgactagtgcctggcgggacgtggccagggcccta
acccgctacgacgagggtttgacggggcggttaaacgacatccgggatggccagtacgcc
aaaaacgaggcggtgccactgcaaccggaactggcggcccgcttgtacaccactaaccgc
cagggccaagtcaccaaccagttgacggcttcgattagccagctggagaagttctaccaa
aacccgtacgactacttcttgcgttacggtttgcacctgaagaagcgcgacgaattagag
gtctccagcgacaagtccgggaccttaaaccacgacgccctggccttctttgtccaaagc
gtgatcgacgaaccggacctgcagctggccgacttggttaaagaagagcaccaagggcgc
caagccgagttgattgaccaagcctttgagcaggccatgaaccaacaagaggagttgcgg
gaattggcggccaataacagccgggtcaacttgcaactacaggtggccaagcagttgatt
accaccatggccaagaccctgtgcctgcaagcaacccagaccgacgcccaaccagtggcg
gttgaaaaggcctttgggcaggcggattggaccggggaaagccaagccgccgagttacca
gcgttaacctttgacctgaccggggcggggctcggtgagggcgccaaggtcagcctgcgg
gggcggattgaccgcttagacgagttgaaactgggcgagcaaacttaccagctggtggtt
gattacaagtcctacaacaaggcgtttgacttggtcgacgcctacgccggccaggccctg
caaatgctggcctacctcaacgcgttacaggcggctaacccgggcaagcaactactgggg
agcctgtacctgcgtttgtacgtcccgaccgttgacgccggcaaggaggggaccgccgag
gagctaaaagagcacctctaccaggggatcacgattaacgatgacgccgtcttggccgcc
ctcgatcacgggcttggtgaaaagggtgccaccctgttaagcatcaaaaagaagagtaaa
aaagataccagccgctttaaggttagtgccgacgatcaattcagcgctaaggcgggctcc
aacctggtctcaccaaccgatttgaagcgcctgatggaccacaacgccgaactgattaag
gaagctgccgttcagatcctgcagggccaaaacgagattaggccgtaccggcgccaagtc
ggcaccaccgcggagaccggcctggcctttagcgacttcttagacgtttcccgcttcgat
caggccctggatgactacaaggaaatcgagctgaccgacgccgacgtggaagcaaagttt
gaacaagaggaggaatag
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