Limosilactobacillus fermentum IFO 3956: LAF_0064
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Entry
LAF_0064 CDS
T00699
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0064
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAF_0064
Archaeal homologous recombinant proteins
LAF_0064
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
CTNNBL
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
BAG26400
UniProt:
A0ABF7R0E2
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All DBs
Position
81076..82209
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AA seq
377 aa
AA seq
DB search
MRFLHTADWHVGKKLNGFDLLAEQHDAFLKINQLAKDYKVDAVVVAGDLYDRSVPSEEAV
EELNKDLIQMNLKEGWPLLAVSGNHDSAVRLATGGDWFKATNFFMHTTVAQAIEEPVTLG
DTQFFLLPFFGLQEVRNYFGDPEIRDLKTAMARIVTKMEEEFDPDRAHVLVAHFFAAGSS
HTDSETQTEVGGLDAVPVDLMAPFDYVALGHLHNKNALQAPRVKYAGSPLKFSASEVNLD
KGVWIVDTQPFNLQWVPLEPLHDLVKLTGSFDELATVEYASHYQEDDFFVIELTDTAPIP
DLMNKLRHYYPKIIALSRVNKAADQSDLAAPAQDLENKDPLALLSDFYHQVTGEELSDNQ
RQWAKDALLAAQKEEEG
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttctacacactgccgattggcacgttggtaaaaagttgaatgggttcgattta
ctggccgaacagcacgacgccttcttaaaaattaatcaattagcaaaggattataaagtt
gatgccgtggtggtcgccggggacctttacgaccgctcagttccaagcgaagaggcggtc
gaagagttaaacaaagacttaattcaaatgaatcttaaggaaggttggccactcttggcg
gtctcgggcaaccacgattcggcggtccgtttagccaccgggggggactggtttaaggcg
accaacttctttatgcacaccacggtcgcccaggccatcgaagagccggtcaccctgggc
gatacccagttcttcttgctgcccttttttggcctccaggaggtacgtaattactttggt
gacccggagatcagggatttgaaaacggcaatggcccggatcgtgactaagatggaagaa
gaatttgacccggaccgcgcccacgtcttggtggcccacttctttgcggccggatccagc
cacaccgattcggaaacccaaaccgaggtggggggcctcgatgcggtaccggttgacctg
atggcaccctttgattacgtggcgttgggccacttgcacaataaaaacgcccttcaagca
ccgcgggttaagtacgccggatcaccgctcaagttttcggcgagcgaggtcaacctcgat
aagggcgtctggatcgttgacacccagccctttaaccttcagtgggtccccttagagccg
ctccacgacctagtgaagctaaccggctcctttgacgaactggcaacggtggagtacgcc
agccactaccaggaggacgacttttttgtaattgagttgaccgatacggcgccgatccca
gatttgatgaacaagctgcgccactactaccctaaaatcattgcccttagccgggtgaac
aaggccgctgaccagagtgatctagcggcgcccgcgcaggacttggaaaacaaggatccg
ctggctctgttgagtgacttttaccaccaggtgaccggtgaagagttaagcgataaccag
cgccagtgggctaaagacgccctgctagcagcccaaaaggaggaggaaggatga
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