Limosilactobacillus fermentum IFO 3956: LAF_0065
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Entry
LAF_0065 CDS
T00699
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0065
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAF_0065
Archaeal homologous recombinant proteins
LAF_0065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
AAA_15
FtsK_SpoIIIE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BAG26401
UniProt:
B2GF12
LinkDB
All DBs
Position
82206..85310
Genome browser
AA seq
1034 aa
AA seq
DB search
MKPLKLTMHYFGPYEDTTIDFTRFDASPLYLIAGDTGSGKTTIFDAMCVALYGNASNERR
SAEMFRSDFATPKQVTEVTFLFEHKGVTYQVYRRPRQVLTMTRGKGEKQYDPKVSLVYPV
GAENPRELTKITEVNQFVQDLLGVNASQFRQLIILPQGEVQRFLMADSKTKEEILTTLFQ
TQLYTNWVTKLDERAKSMRDQTQDITSQLKVLMGQVDGVSDQLELDQWQVAVGDLLTEKK
AELRAVTEQVTTAQKAADQLQAQLTAERRLAEDHAALVSCETQQLELKERAPQIKRLADE
NEETAWAQQHQTAYHEWQAGTTKLADLTKQQAACEQKQAAVKVRVQELTQVAERLKEQEP
AVQERQRQVANIREKLPLFEEVAALSKRLEKERRAQVEQERTVSDQTSALTKLQAELDRV
DQELQAAPDLTQAAVTIATRVQQVVRWQQAVTALGEQAKELANQEQALRDLNAQLAEAKK
TAQAAQADLKEKKKARLAAMIATLASELEEGEACPICGSTTHPHVATAVQTGQEVTEVTL
DTAQAKVTKAETTLATLTTRQANQDSQLEKGRATFQDELATLCQAVASPAGDLEAVTAAV
AEAVAALDHDRQELQNAQAKETENQQRQVSLTKQIQAGQAKYQELQAAVNEGRLNVNQTQ
TELVNKQGQLPAELPDLASAERWLKEEEQALADFASQQTQNQDALSRAQTQLTQLTTTSQ
QLADSAKATAAEVDQRKRELTAALAERQAAWEVFERALARVPELAARQREVNDYRQRLAS
LADQRQRLVEQIAGRPKPDVEKTAGQLKKAQVKLDQLKGAVIEQGNALTRIKEIKQQVEK
KAAKQGDTERQLRELSSLCALLKGQGGTQLGLQRYVQRHYFTEVLAVANQWLAKLTHGRY
QMHLDGEADFKGRQNKNGLEIYADDDYAGKARKVQSLSGGESFLTALALALALGEVVQRH
HGGVEIEALFVDEGFGSLDQDALGEVLDTLQSLDGNRMIGIISHVTELEEQIPDQLQVIA
ENGRSKVKYHLATD
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccactcaagttaacgatgcactactttgggccgtacgaagacaccacgattgac
ttcaccaggtttgacgctagcccgttatacctgattgccggcgacaccgggagcgggaag
acgaccatctttgacgccatgtgcgtggccctgtacggcaacgcctccaacgagcgccgg
tcggccgaaatgtttcgctccgactttgcgacccccaagcaggtgaccgaggtaaccttc
ctatttgaacataagggggtcacctaccaagtctaccggcggccacggcaagtcctgacg
atgacccggggcaagggggaaaagcaatacgacccaaaggtttcgctagtgtacccagtt
ggcgctgaaaacccccgtgagttgacgaagatcaccgaggtcaatcagttcgttcaggac
cttttgggggtcaacgccagtcagttccgccagctgatcatcctgccccagggcgaggtg
caacgctttttaatggcggattccaagaccaaagaagagatcctcaccaccctctttcaa
acccagctctacaccaactgggtcacgaagctggatgagcgcgccaaaagtatgcgtgat
caaacccaagacatcaccagtcagctcaaggtcctgatgggccaagttgacggggttagc
gaccagctagagctcgaccagtggcaagtggcggtcggggacctgctgaccgaaaaaaag
gcggagctaagggcggttaccgaacaagtaaccacggcacaaaaagcggccgaccagttg
caagcccagttgaccgcggaacggcgcttggccgaggaccacgctgcgttagtttcctgt
gaaacgcaacaattggagcttaaagaacgggcgccgcaaattaaacgcttggccgacgaa
aacgaagaaacggcgtgggcccaacaacaccaaacggcataccacgagtggcaagccggg
acgaccaaactggcggacctcaccaagcagcaagcggcgtgtgaacaaaaacaagccgcg
gttaaggtgcgggtgcaagaattgacccaagtggccgaacggttaaaggaacaagaaccg
gccgtccaagaacgccaacgccaagtggccaacattcgagagaagctccccctctttgaa
gaggtggccgccctaagtaagcggctggaaaaagagcgccgggcccaagttgaacaagaa
cggacggttagtgaccaaacgagcgccctgactaagttacaggctgagttagaccgggtg
gatcaggaactccaagccgctcccgacctgacccaagcggcggttacgattgccaccagg
gtccaacaagtagtccgctggcagcaggcagtgaccgccctcggggagcaagccaaggag
ctggccaaccaggagcaagccctgcgtgacctaaacgctcagcttgccgaggctaaaaaa
accgcccaagccgctcaagcggaccttaaagaaaagaagaaggcccgcctcgccgccatg
attgcaaccctggctagcgagctggaggaaggggaggcctgcccaatttgcgggagtaca
acccacccccacgtcgccacggcggtgcaaacgggccaggaagtaaccgaggtaacgcta
gatacggcccaggcgaaagtgaccaaggcggaaacgaccctggcgactttaaccacgcgg
caagcgaaccaagacagccagctagaaaagggacgggcaactttccaagacgaattggca
acgctttgccaagccgtggcaagcccagcgggtgacctagaggcagtcacggcggccgtg
gccgaagccgtcgcggcgctggaccacgaccgccaggaattgcaaaacgcccaagctaag
gaaacggaaaaccagcaacgccaggtaagcctgaccaagcagatccaggcggggcaagca
aagtaccaggaactgcaagcagcggtcaatgaagggcgcctgaacgtcaaccaaacccaa
accgagttagttaacaagcagggccagttgcccgccgaactgccggacctggcgagtgcc
gagcggtggctaaaggaagaggaacaggcgttagcggactttgccagccagcaaacgcaa
aaccaggacgcccttagtcgggcccaaacccaattaacccaactgaccaccacgagccag
cagctagcggacagcgccaaagcgaccgcagccgaagtggaccaacgcaagcgggaacta
acggcggccctagcagaacgccaagcagcgtgggaggtctttgaacgggccctggcccgc
gttccggaactggcggcccgccaaagggaggtcaacgactaccgtcaacggctggcgagc
ctggccgaccagcgccaacggttggtggaacaaatcgccggccggcctaagccggacgtg
gaaaagacggcggggcagttgaagaaagcccaggtgaagttggaccagctcaaaggggcg
gtgattgaacaaggcaacgccctgacgcggatcaaggaaattaaacaacaagtcgaaaaa
aaggcggctaagcagggcgacaccgagcgccaactgcgggaactttccagcctgtgcgcc
ctactcaaggggcagggcgggacccagttaggcttgcagcggtatgtccaacgccactac
tttaccgaggtcttggcggtcgctaaccagtggctagctaagttaacccacggtcgctac
caaatgcacctggatggggaagccgactttaaggggcggcagaacaaaaacgggttggaa
atttacgccgacgatgactacgccggcaaagcgcgcaaggtgcaaagcctgtcggggggt
gagagcttcttgaccgccctggcgctggcgttggccctcggggaagtcgttcagcgccac
catgggggcgttgaaatcgaagccctcttcgttgacgaagggttcggctccctagatcaa
gacgccctgggtgaagtcctggataccttgcaaagcctggacggcaaccgaatgattggg
atcatcagccacgtgaccgagctggaggagcagatccccgatcagttacaggtgatcgcg
gagaatgggcgcagcaaggttaaatatcacctggcaacggactaa
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