Limosilactobacillus fermentum IFO 3956: LAF_0179
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Entry
LAF_0179 CDS
T00699
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03420
Nucleotide excision repair
lfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAF_0179
03430 Mismatch repair
LAF_0179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0179
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAF_0179
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAF_0179
MMR (mismatch excision repair)
Other MMR factors
LAF_0179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C_2
UvrD-helicase
AAA_19
UvrD_C
AAA_30
Viral_helicase1
NACHT
DEAD
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAG26515
UniProt:
A0ABF7R0R3
LinkDB
All DBs
Position
complement(221909..224230)
Genome browser
AA seq
773 aa
AA seq
DB search
MVTELTEQQREQARVDTVIKEIDRQIEGAKQALAAAHQETRAVEQNYSENASINRYEIDD
IAESRSEIEQQRQLVARASENETILAHQLDTLKQLRAQPYFGRIDIQDPGQAEAESLYIG
TASLMNEDRTDFLIYDWRAPIAGVYYNGTLGPVTYQTPAGTQRTTLVKKRQFTIHDGQIE
NMFDTNETVGDAMLQAALGRQNDQTMQNIVATIQKEQNDIIRNTTADLMVVQGVAGSGKT
SAILQRIAYLLYHARESLNADQIVLFSPNLLFSHYIASVLPSLGERNMRQVTLPNFLARR
FEGLQVESLFDRYETRQQSNAPHPVADWLEGAASMAAVKDYVDQLANSQAPLQFADLTFE
GRTLFTKEAIASIYHHQVAKMTVADRLVKVKNALLRRLQHLATTEAKRDWVAKELDTLSN
QELHALYGQKTIDDFADEQAQAAYLARRWAKKRLRVVADAIYNNYFLDFHALYRQFLLHL
PLTGPITEAVQQQLATDFSHGVEFHRIKLVHTAPFLYLRDLLTGGGQNRSFQYVFIDEMQ
DYSLATLIYLKHAFPDAKFTVIGDAEQALFKPLELPETLLNRVGDALAAKHPRLIALRRS
YRSTFEITTFAKSLLPDGDEITAFARHGDPAKLQVHYGQAAWQTGLIKAVQAMQQRFPTV
AVLTRDQEEASQVYHHLYGQVTDLHRLSEEDSQLPSGVLILPIYLAKGLEFDGVVIANVS
AAHLGDQATGLLYTMATRAMHALTMLTLGPVTPALTGAASQYLTIEPPTEPQR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ttggtgactgaactaacggaacaacaacgagaacaagcgcgggtggatacggtaatcaag
gaaatcgaccgccaaattgaaggggccaaacaagcgctagcggccgcccaccaagaaacc
cgggcggtggagcaaaactacagcgaaaacgcctcaattaatcgctacgaaatcgacgac
attgccgaatcacggtccgaaatcgaacaacagcgccaactggtggcccgggccagcgaa
aacgaaaccatcctggctcaccaactggacaccctaaaacagttgcgggcccaaccctac
tttggccgcatcgacattcaagacccggggcaagcagaagccgagtccctgtacattggc
acggcctctttaatgaatgaggaccggaccgactttttgatttacgattggcgcgccccg
attgccggggtgtattacaacggcaccctgggcccggtaacttaccaaaccccggccggc
acccaacggacgaccctggttaaaaagcgccagttcaccatccatgacggccagattgaa
aacatgtttgacaccaatgaaacggtcggcgacgccatgctgcaagcggccctggggcgg
caaaacgatcagacgatgcaaaacatcgtcgccacgatccaaaaggaacaaaacgacatc
attcgaaacaccaccgccgatttgatggtggtccaaggggtggccggctccgggaagacc
tcggcgatcctccagcggattgcttacctgctctaccacgcccgtgaatcgctgaacgcc
gaccaaatcgtcctcttctcacccaacctcttgttctcccactacatcgcttcggtcctg
ccctcgcttggtgaacgtaacatgcgccaggtaaccctgcctaacttcttagcccgccgc
tttgaagggctacaagttgaatcactctttgaccgctacgaaacccgccagcaatccaat
gccccccacccggtagcggattggttggagggcgccgctagcatggccgccgtcaaggac
tacgtcgaccaactggccaacagccaagccccccttcagttcgccgacctgacctttgaa
gggcgcaccctgtttaccaaagaagcgatcgccagcatctatcaccaccaggtcgctaaa
atgacggtggccgaccggctagttaaggtcaaaaacgccctgctccgccgccttcagcac
ctagctaccaccgaagccaagcgcgactgggtggccaaagagctcgacaccctgtccaac
caagagcttcacgccctctacggccaaaagacgatcgatgactttgcggatgaacaggcc
caagccgcctacctagcccgccgctgggcgaaaaaacggctccgggtggtcgccgacgcc
atttacaacaactactttttggactttcacgccctctaccgccagttcctgcttcacttg
cccctgaccggccccatcacggaagcagtgcaacagcaactggccaccgactttagtcac
ggcgttgaatttcaccggatcaagctagtccacaccgctcccttcttatacctgcgcgac
cttttgaccggtggggggcaaaaccgcagtttccaatacgtcttcattgacgagatgcaa
gactactcgctggcgaccttgatctacctcaagcacgcctttccggacgctaagtttacc
gtaattggcgacgccgagcaggccctcttcaaaccgctcgagttaccagaaaccctcttg
aaccgggttggcgacgccctagcggctaagcacccccgcttaattgccctacgccgctct
taccggtccacctttgaaatcaccaccttcgccaaatccctgttgcccgacggcgatgaa
atcaccgccttcgcccgccacggggacccggccaagcttcaggttcattacgggcaagcg
gcctggcaaaccggcttaatcaaggcggtccaagccatgcagcaacgatttcccaccgtc
gccgttttgaccagggatcaagaagaggccagccaggtttaccaccacctctacggccaa
gtaactgacctgcaccgcctgagcgaagaagacagccagctccccagtggggtcttgatc
ttgccaatttacctggctaaggggctcgaattcgacggcgtggtgatcgctaacgtctcg
gccgcccacctcggcgaccaagctaccgggctcttgtacacgatggcgacccgagcaatg
cacgccttgacgatgctaacgctagggccggtcacgcccgctttaaccggggcggccagc
cagtacttaaccattgaaccccccacggaaccacaaagataa
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