Limosilactobacillus fermentum IFO 3956: LAF_0209
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Entry
LAF_0209 CDS
T00699
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAF_0209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfe03019
]
LAF_0209
03009 Ribosome biogenesis [BR:
lfe03009
]
LAF_0209
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAF_0209
Messenger RNA biogenesis [BR:
lfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAF_0209
Ribosome biogenesis [BR:
lfe03009
]
Prokaryotic type
rRNA helicases
LAF_0209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
DUF1087
HTH_22
Motif
Other DBs
NCBI-ProteinID:
BAG26545
LinkDB
All DBs
Position
255377..256855
Genome browser
AA seq
492 aa
AA seq
DB search
MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI
EHVDVENPAIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNP
QILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLF
SATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPD
LTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRA
RMLPLKPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALLND
LTKDDASQVPVKITPERPLPSRNRNGRGGNYRRGGHGNSHRNFHRNGGDGHRRFNGDRKR
RFSNNRNRRRED
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgtattttagtgaattaggtttatctaacaagttgctcaaggcgatccaacgctccggt
tacgaagaggccacgccgatccaagaacaaacgatcccgatggtcttagccggcaaggac
gtgatcggccaggcccaaactgggactgggaagacggcagcgtttggcctgccaaccatt
gagcacgttgacgtggaaaacccggcgattcaaaccctgatcatctccccgacccgggag
ttggccatccaaaccgaagaggaactcttccgcctcggtaaggaaaagcgcgtgaaggtc
caagtggtttacgggggcgccgatatccgccgccaaatccgttccttagaaaagaatccc
caaatcctggtcgggacgccggggcggttgcgtgaccacttgcgccgcggaacggtcgac
ttatctggggtgcaaaccctagtcttagacgaagccgatgaaatgttgaacatgggcttt
ttagaagacatcgaagacattatcaagcaaacgccaagcgaacgccaaaccctgctcttt
tcggccaccatgccgccggaaattaagcggattggggttcaatttatgcacgacccgcaa
accgttaagatcaaggctaaggaactgaccaccgacctggtggatcagtactacgttcgg
gccaaggattacgagaagtttgacatcatgacccggatgatcgacgtccaagacccggac
ctgacgatcgtctttggccggaccaagcgtcgggtcgatgaactatcccgcgggctgatt
gcccggggctacaacgccgccgggattcacggtgatttgacccaggaccggcgcagcaag
atcatgcgccgctttaaggagggccacttggacatcttagtggcaaccgacgtggcggcc
cggggcttagacatttccggggtgacccacgtttacaactacgacatcccgtctgacccg
gattcttacgttcaccggattggccggacgggccgggccgggcaccacggtgtctcttta
accttcgtgacgccaaacgaaatgaattacctgcacgaaatcgagaagctaacccgggcc
cggatgttaccgctgaagccaccgacggaagaagaagccttccgtggtcaagtggccagc
gcctacaacgacattgattccttggtggctgatccgacgaccaaccgttacagcgaagac
gccgctaagttgttggaaaagtacgacgccgttgaattggtggcggcccttttaaacgac
ctgactaaagatgacgccagtcaagtaccggtcaagatcacaccggaacgaccactacca
agtcgcaatcgcaacggtcgcggtggaaactaccgtcgcggcgggcacggtaattcacac
cgtaacttccaccggaacgggggcgatggtcaccggcgtttcaatggtgaccgtaagcgg
cgcttttcaaacaaccggaaccggcgccgcgaggattaa
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