Limosilactobacillus fermentum IFO 3956: LAF_0215
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Entry
LAF_0215 CDS
T00699
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAF_0215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0215
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAF_0215
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAF_0215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAG26551
UniProt:
A0ABF7R100
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All DBs
Position
260241..263783
Genome browser
AA seq
1180 aa
AA seq
DB search
MKLTELAKQQPAFSKIKEVIDSGQRQLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYH
MQELVADLENLLGEDQVFAFPVEEVLATEVATASPDYRLQRVQALNTLLADQAAVVVTDA
AGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAMRGSIVD
IYALNTAHPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAKLAQLKGE
LQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVYEQPASLLDYLPA
KSNLVLDDWGRIKEGAKRITEQETAWLMDKVAAKRRVRGATLDNGVMETLPKRPGPQTYL
ALFQKGLGQVKLAQISDLATREMQRFFSQLDLLKGELKRWQSQGATVVIMANSPERRNQV
ATTLADFGVAVVQTAPDQLMEHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNRRPR
AQKLANAERIKSYTDLKPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLDYRDNAQIFV
PVTQLNLVQKYVSAESKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGF
AFPKDDYLQEKFDDEFPYAETKDQLQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRA
IFKAVAGGKQVAFLVPTTILAQQHYDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLN
GEIDIVVGTHRILSKDVQFKDLGLLIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPR
TLHMSMMGVRDLSVLETPPTGRYPIQTYVLEQNGAVIRDGILREMQRGGQVYYLHNRVHD
IERVVAQLAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVN
TLFVEDADRLGLAQLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTEMLADAVATKQGKKRPVKSNAEVEL
GVEAYLPSTYVDDQRQKIELYKQIRRAKSEEELTELAGDLIDRFGDYQTPVANLLTIGTI
KLYADQAMLSEIERKRDNIYVNFTVVGSKKINAPQIIQALAKTRFKATMDEKEDGAISLR
LVIQPKMTEQDWLNQLLALTRELGQRVQEANNEQEGETKQ
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttaacggagttggccaagcaacagccagccttttcaaaaattaaggaggtcatt
gatagtggccagcgccagttgattaccggggtttccgggtcggctaaaacgctcctgtta
gcggcgctgcaaggggagttgtcacacccgcagttagtggtgtgcgacagtctttaccac
atgcaagagctggtcgccgaccttgaaaacctgcttggtgaggaccaggtctttgccttt
ccggtcgaagaggtgttggcaaccgaagtggcgaccgcttcacctgactaccgcttgcaa
cgggttcaggccctcaatacccttttggcagaccaagcggccgtcgttgtgacggatgcg
gcgggtctgcgccggcgcctgcccaaaccgggggatttccaagccgccaccctgacggtc
gaagtcgggggtgaacttgatccaactacggtggggacccagttgatggcgatgggctat
cagcgccaaaagatggtcttaaaacccggggactttgccatgcgggggtcgattgtcgac
atttacgccctgaacacggcccacccggtgcggatcgacctctttgacaccgaggtggat
tccctacgctactttgacgccgaaagccagcggagcgttgaaaacatccgggcggtgacg
atcttgcccgctaccgatttcatcgccccacccgccaagttagcccagctaaagggggag
ctgcaagacgattaccaccacttagctcaaacggcggatgaagaggaacgccaggccctg
tttggcctctttgacccggtcatctccgctttggacgcggggcagttaccagtggaaatg
ctggagtacgccgaccgggtgtacgaacagccggcctccttgcttgactacctacccgcg
aaaagcaacctggtcttagacgactgggggcggattaaggagggagccaagcgaattacg
gagcaagaaactgcctggttgatggataaggtggccgctaaacgccgggtcaggggtgcc
acccttgataacggggtgatggaaaccctacccaagcgcccgggcccccagacctaccta
gccctctttcaaaaggggcttggacaagtcaaactggcgcagatctctgacttagcaacg
cgggagatgcagcgcttcttttcccaattggaccttttaaagggtgagctcaagcgctgg
cagtcccagggggcaacggttgtgatcatggccaacagcccggaacgtcgaaaccaagtc
gccactaccctagcagactttggggtggcggttgttcaaacggcgcccgaccagctaatg
gaacaccaggtccagctggtggcggccaccttagctaacggatttgaaatgcccccggcc
aacttggtggtgattaccgaggcggaaatgttcaaacaggttaagaaccgccgtccacgg
gcccagaagttagcgaatgccgagcggatcaagtcctacaccgacttaaagccgggcgat
tacgtggtccacgtgaaccacgggattggcctgtttgccgggattaagacgatggaagtc
gatggcgttcaccaggattacatggtgttagattaccgcgacaacgcccagatcttcgtg
ccagttacccagttaaacctggttcaaaagtacgtttcggctgaatcaaagacgccccgc
ttaaaccgcttagggggcgttgagtgggccaaaaccaagcggcgggtggcggccaaaatt
gaagacattgccgacgacttggtcgacctttacgccaagcgcgagaccgaaaagggcttt
gcctttcccaaggatgactacttgcaagagaagtttgacgatgaattcccgtacgccgaa
actaaagaccaactacaaagcatccaggaaattaaggctgacatggaacgcccgcggcca
atggaccggctcttagtcggtgacgttggttacggcaagaccgaggtcgccctgcgtgcc
atcttcaaggccgttgccgggggcaagcaggtcgcctttttggtccccaccaccatctta
gctcagcagcactacgacacgatgaaggcccgctttgaaggctttccggtcacaattgcc
ctgatgtcacgctttaagaccgccaaggaattaaaggagaccgaccgggggcttttgaac
ggcgaaattgatatcgtggtggggacccaccggatcttatctaaagacgtccagtttaag
gacctggggctcttgattgttgacgaagaacagcgctttggcgtcaaacacaaggagcgc
ttaaagcaactcaaagccaacgtcgatgtcttaaccctgacggcgacgcccatcccgcgg
accttgcacatgtcgatgatgggggtgcgggacctgtccgtcttagagaccccgccgacg
ggccgttacccgattcaaacctacgtcttggaacaaaacggcgccgtgattcgggatggg
atcctgcgcgaaatgcaacggggcgggcaggtctattacctgcataaccgggttcacgac
attgaacgggtggtcgcgcagttagcggagctggttcccgaagcccggattggctacatt
cacggccagatgagtgaaaacgagttggaaggggtgctgtacgattttatccgcggtgag
tacgacgtcttagtaaccacctcgatcatcgaaaccggggtcgatatcgctaacgttaac
accctctttgtcgaagacgccgatcgcttggggctagcccaactttaccagattcggggg
cggatcggtcgcagcaaccgagtggcttacgcttacttcatgtaccaggaaaataaggtt
ctaactgaacagggcgaaaagcggttagctgccattcgggacttcaccgagctagggtcg
ggctttaagattgccatgcgtgacctgtcgatccggggggccggtaacctcctgggtaag
cagcagcacggtttcatcgattcggttggttacgacttgtacaccgagatgttagctgat
gcggtggccaccaagcagggaaagaagcgaccggttaaatcgaacgccgaagtcgagctc
ggagtcgaagcctacttgccaagtacttacgtcgacgaccagcgccaaaagatcgaattg
tacaagcagattcgccgggccaagagtgaagaagaactgaccgaattggctggtgaccta
attgaccgctttggggactaccaaacgccggtggcgaacttattaacgatcgggacgatc
aagctgtacgccgaccaagcaatgctaagcgaaattgagcgcaagcgcgataacatttac
gtcaactttacggtggttggtagtaaaaaaatcaacgccccacaaattatccaggccctg
gccaagacccgctttaaggccaccatggatgaaaaagaggacggcgccatttccttacgg
ctggtaatccaaccaaagatgacggaacaggactggttgaaccagctactggcgcttacc
agggaattgggtcagcgagtgcaagaagcaaacaatgaacaagaaggggaaaccaagcaa
tga
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