Limosilactobacillus fermentum IFO 3956: LAF_0354
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Entry
LAF_0354 CDS
T00699
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAF_0354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0354
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAF_0354
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAF_0354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
nSTAND1
AAA_21
nSTAND3
AAA_22
AAA_23
AAA_18
AAA_33
DnaJ_CXXCXGXG
APS_kinase
AAA_14
AAA_25
NACHT
SLFN-g3_helicase
ATPase
Viral_helicase1
MMR_HSR1
NB-ARC
ATPase_2
cobW
NTPase_1
RNA_helicase
PRK
DUF87
MeaB
T2SSE
Mtrc-MtrF_II-IV_dom
ScfRs
dNK
Motif
Other DBs
NCBI-ProteinID:
BAG26690
LinkDB
All DBs
Position
424641..427502
Genome browser
AA seq
953 aa
AA seq
DB search
MANEKIVIRGARAHNLKNIDVTIPKNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGQMDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEINDFLRLLWARVGTP
LCPTHGVPIASQSPEQMVNQILELPERTRLQVLAPVVHEKRGTQKAVLAKIKKDGFVRVQ
VDGETYDVDEVPELEKNKKHSIDVVVDRIIVKDGVRSRLFDSFEAALRLADGVAVADIIG
GEKIPFSEHYACPYGDFSMPELEPRLFSFNAPLGACPVCEGLGSKLEVDVDLVVPDQTKT
LNEGALVPWNPISSKYYPSLLAQYCAAAGIDMDTPFEDFDDQTKHQLLYGDDLTFHFHYQ
NDFGGIRDVDVTFEGVVNNVSRRYKETNSDFTREQMRKYMAELPCPACHGYRLNEQALAV
KVAGQNIGQVSELPISEEIDFFQRVHLSEQDQEIARPILKEILDRLTFMQNVGVEYLTLS
RSARTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLINSLKKMRDLGNTL
IVVEHDEDTMRAADYIIDIGPGAGEDGGQVMAAGTPKQIMRSRKSLTGKYLSGREMIPVP
SERRSGNGHVLTLVGARENNLKDITVKFPLGKFICVTGVSGSGKSTLVNQILKRILAQQL
NRASDKPGCYKEIRGLENVEKVIDIDQSPIGRTPRSNPATYTGVFDDIRGLFAQTNEAKL
RGYGKGRFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVEYKGK
NIAQILDMTVEEALHFFSAIPKIRRKLQTIQDVGLGYVHLGQPATTLSGGEAQRMKLASE
LHRQSNGRSFYILDEPTTGLHMADIKRLLAVLQRLVDAGNTVLVIEHDLDVVKSADWLID
LGPEGGQAGGEIVATGTPEEVAQVPASYTGHYLKEMLDRDAKWAAERAAKKKK
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgaaaagattgtaattcggggtgcccgggcacataacttaaagaacattgac
gtgacgatccccaagaataagttggtcgtcatcacggggctgtctggttccggcaagtcc
tccttagcctttgataccttatacgctgaggggcagcgccggtacgtggagagcttgtcg
gcttatgcgcgccagttccttggccaaatggataagccggacgtggactcaattgaaggg
ctatcgccggcgatctcgattgatcaaaaaacgacttcccataacccccgttcaacggtg
gggacggtgacggaaattaacgacttcttgcgcctcttgtgggcccgggtggggacgccg
ctttgtcccacccacggggtaccaattgccagccaatcacctgagcaaatggttaaccag
atcctagagttgccagaacggacccgcctgcaggtactggcgccggtcgtccacgaaaag
cgggggacccaaaaggcagtgttagccaagatcaaaaaggacggctttgtccgggtgcaa
gttgacggtgaaacctacgacgtcgatgaggtgccggaactggagaagaacaagaagcac
tccattgacgtggtggtggaccgcattatcgtgaaagacggcgttcgttcacgcctgttt
gactcctttgaagcggccttgcgcctagccgatggggtggcggtggccgacattattggc
ggtgagaagatccccttttccgaacactacgcctgcccgtacggtgacttctcgatgccc
gaactggaaccacggttgttctccttcaacgccccgctgggtgcctgcccggtttgtgag
gggctcgggagtaagttagaagttgacgtcgacctcgtggttcccgatcaaacgaagacc
ttaaacgagggggccctagtgccgtggaacccaatctcttctaagtactaccccagcctg
ttggcccagtactgcgcggccgccgggattgacatggacaccccctttgaagacttcgat
gaccaaaccaagcaccagcttttgtacggtgatgacttaaccttccacttccactaccaa
aatgactttggcggcattcgtgacgtcgacgtgacctttgagggggtggtcaataacgtt
tcccgccgctacaaggaaacgaactccgacttcacccgcgagcagatgcgtaagtacatg
gccgagttgccgtgcccagcctgccacggttaccggctcaacgaacaggccttggcagtg
aaggtggcgggccaaaacattggtcaggtttcggaactgccgatttctgaagaaattgac
tttttccagcgggttcacttgtctgaacaagaccaagagattgcccggccaattctaaag
gaaattctcgaccggctgacctttatgcaaaacgtgggggttgagtacttgaccctctcc
cggtcggcacggaccctctccgggggggaggcccagcgaattcggttggcgacccagatc
ggttccaacttgtccggggtcatgtacgtgttagatgaaccatcgattgggctccaccag
cgcgataatgaccgcttgattaactcactgaagaagatgcgtgacctggggaacaccctg
attgtcgtggaacacgatgaggatacgatgcgggcggccgattacatcatcgacattggt
ccgggggccggcgaagacggtggtcaggtgatggcggctgggaccccgaaacagattatg
cgctcacgcaagtctttgaccggtaagtacctgtcgggacgggagatgattccggtaccc
agcgagcgtcgatctggcaatggccacgtcttgaccctcgtgggggccagggaaaacaac
ctcaaagacatcaccgttaagttcccactggggaagtttatctgcgtcaccggggtgtct
ggctccggtaagtcgaccctggttaaccagatcctcaagcggatcctggcccagcaacta
aaccgggccagcgacaagccagggtgttacaaggagatccgcggcttggaaaacgtggaa
aaggtgatcgacattgatcagtcaccaattgggcggacgccgcgctcgaacccggccacc
tacacgggggtctttgacgacatccggggcctgttcgcccaaactaatgaggccaagtta
cggggctacggaaagggccgcttctcctttaacgtcaaggggggacggtgtgaagcctgc
cacggggacggaattatcaagattgagatgaacttcttgcccgacgtctacgttccctgc
gaggtttgccacggcacccgttacaactcggaaaccttggaggttgaatacaagggcaaa
aacatcgctcagatcttagacatgaccgttgaagaggccctccactttttcagtgcgatt
cccaagattcggcgtaagcttcaaacgattcaagacgttggcctaggctacgttcacctc
ggccagccagccaccaccctgtccgggggggaagcccaacggatgaaactggctagtgag
ttgcaccgtcaatctaacgggcgttccttttacatcctcgacgaaccaacgaccgggctc
cacatggccgacatcaagcgcctgctagcagtgctacagcgcctagttgacgctgggaac
accgttttggtgatcgaacacgacttagacgtggtcaagtcggccgactggttgattgac
ctcggtcccgagggggggcaagccggtggagaaattgtcgctaccggaaccccggaagaa
gtggcccaggtcccagcttcttacacgggtcactacctcaaggagatgttggaccgggat
gccaagtgggcggcggaacgggccgctaaaaagaagaagtaa
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