Limosilactobacillus fermentum IFO 3956: LAF_0512
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Entry
LAF_0512 CDS
T00699
Name
(GenBank) conserved hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAF_0512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfe03019
]
LAF_0512
Messenger RNA biogenesis [BR:
lfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAF_0512
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
ATP-synt_B
KH_2
YycC
Motif
Other DBs
NCBI-ProteinID:
BAG26848
UniProt:
A0ABF7R1Z1
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All DBs
Position
606374..607933
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AA seq
519 aa
AA seq
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MNAISLLIAAVAIVVGLIAGYVGRKIVFEQRLTQAKENAAGIIATAQKEAATAKKEAILE
AREESHRYREVVEQELKDRRSEVQKQEERLLQREATLDRKDTSLENRETTISARERKLDQ
KTEQIQKRQQQAADLVEQRQAELEKVAQLSHEEAKKRLLSQLKEELQSERETMIRQSEQE
AELTAEKNAKDLIVAAIQRSAADMVQETTVTVVTLPNDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVVLSGFDPVRREIAKMALERLIQDGRIHPARIEEAVERARKDMDTQLRE
VGEQTVFDLGLHTMHPDLIKTVGRMKYRTSYGQNVLQHSIEVAKLAGIMAAELGEDVTLA
KRAGLLHDIGKAIDHEVDGSHVELGVELTRKYKENKVVINTIASHHGDVAPTSIIAVLVQ
AADAVSGARPGARSESLEQYIQRLKKLEELANQNSGVDHSYAIQAGREIRVIVKPTKVSD
KQAVTLAHDLKQEIEKQLEYPGHIKVTVIRETRAVDYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaatcagcttattaatcgccgctgtcgctattgttgtcggtctaattgccggt
tacgtgggtaggaaaatcgttttcgaacaacgattaacccaggcgaaggaaaacgccgcg
gggattattgcaactgcccaaaaggaggcggcgacggcgaaaaaggaggccattttagag
gcccgagaagaaagccatcgctaccgggaagtcgtggaacaagaactcaaggaccgtcgt
agtgaggtccaaaaacaagaagagcgcttgctccaacgcgaagcaacccttgaccgcaag
gacaccagtctggagaaccgcgaaactacgatcagcgcccgggaacggaagctcgatcaa
aagacggagcagattcaaaagcgtcaacaacaggcagcggatttagtcgagcagcgccaa
gccgagctcgaaaaggtcgcccagctatcacacgaagaggccaaaaaacggctcctttcg
caactaaaagaagagttgcaaagtgaacgggaaacgatgattcggcaaagcgaacaagaa
gccgaattaacggcggaaaagaacgccaaggacttaatcgtggccgcaattcaacgctca
gccgcggatatggttcaagaaaccaccgtgaccgtagtaaccctccccaatgacgacatg
aaggggcggatcattgggcgcgagggccgtaacatccggaccttagaaaccctgaccggg
atcgacctgatcatcgatgacacgccggaagcagtcgtcttatccgggtttgacccggta
cggcgtgagattgccaagatggccctggagcgcttgatccaagacggccggattcacccg
gcccggattgaggaggcggttgaacgggcccgcaaggacatggatacccagctgcgtgaa
gtcggggagcaaacggtctttgacctaggcctgcacaccatgcacccggacctgattaag
acggttgggcgaatgaagtaccggaccagttacggtcaaaacgtcttacagcactcaatt
gaagtcgccaagttagcggggatcatggccgctgagctcggtgaagacgtgaccctcgct
aagcgggccggcctcctgcacgacattggtaaggccatcgaccacgaagttgatggttcc
cacgttgaactaggggtggaactaacccgcaagtacaaggagaacaaggtcgttattaat
acgatcgcatctcaccacggcgacgtggcgccaacctcgatcattgccgtcctggttcag
gctgccgatgccgtttccggggcccgtcctggtgcccgtagtgagtcgttggaacaatat
attcaacgactcaagaagctagaggagttggccaaccaaaatagcggtgttgatcattcg
tacgctatccaggctggccgcgagattcgcgtgattgtcaaaccaaccaaggtttccgat
aagcaagcggtcaccttggcccacgacctcaagcaagagattgaaaagcaacttgaatac
ccagggcacattaaggtgacggtaattcgggaaacccgggccgtcgattatgccaagtag
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