Limosilactobacillus fermentum IFO 3956: LAF_0516
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Entry
LAF_0516 CDS
T00699
Name
(GenBank) holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LAF_0516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0516
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAF_0516
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAF_0516
RecFOR pathway proteins
LAF_0516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Mg_chelatase
TIP49
AAA_16
AAA_14
nSTAND3
DUF815
AAA_22
RNA_helicase
AAA_3
NB-ARC
AAA_25
TsaE
AAA_24
IstB_IS21
Sigma54_activ_2
Bac_DnaA
AAA_33
NTPase_1
ABC_tran
NPHP3_N
NACHT
Parvo_NS1
AAA_17
ATPase_2
AAA_18
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAG26852
UniProt:
A0ABF7R1G1
LinkDB
All DBs
Position
613296..614315
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AA seq
339 aa
AA seq
DB search
MEQDFDDVLSNEVTDDQEGRDEVSLRPQTLATYIGQARIKHELAVYIQAAKSRGEALDHV
LLYGPPGLGKTTLAMVIANEMQVAIKTTSGPAIEKPGDLVALLNDLKPGDVLFIDEIHRL
PKVVEEMLYSAMEDFYIDIVVGEGPTAHPVHFPLPPFTLIGATTRAGLLAAPLRDRFGIV
ARMDYYTTTELSQIIDRSATIFNTKIQEDGAHELALRSRGTPRIANRLLKRVRDFAQVGG
QAAIDPATVDRALDLLAVDDQGLDEIDRKLLTTMIEHYHGGPVGIRTIAANIGEEVNTIE
EMYEPYLLQIGFLMRTPRGRVVTPAAYEHLKIPFDQEEN
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagactttgatgacgttctttcaaatgaggtcactgatgaccaggaggggcga
gacgaggttagcctgcgcccccaaaccctggcgacctacatcggccaagcgcggatcaaa
catgaactagcggtctacattcaggcggctaagtcacgcggggaggccttagaccacgtc
ctcttgtacgggccgccggggttaggtaagacgaccctagcaatggtgatcgccaacgaa
atgcaagtggccatcaaaaccacctcggggccagcgattgaaaagccgggtgacctggtg
gcactcttaaacgacctcaaaccgggggacgtcttgttcatcgatgaaatccaccgccta
cccaaggtggtcgaagaaatgctctactcggcgatggaggacttttacatcgacatcgtg
gttggcgagggtcccacggcccacccggtccacttcccgctgccgcccttcaccctgatt
ggggctaccacccgggccgggctactagcggcgcctttacgggaccggtttgggatcgtg
gcccggatggattattacactactacggagctcagccaaatcattgaccgttcggcgacc
atcttcaacactaagattcaagaagacggggcccacgaactagccctacgctccaggggc
acgccccgaattgccaaccggctcttaaagcgggtgcgtgactttgcccaggtgggcggt
caggcggcaattgacccggccacggttgaccgggccctagacttattggccgttgatgac
caggggcttgatgagattgaccgcaagctcctcaccacgatgatcgagcactaccacggt
ggcccggtggggatccggacgattgccgccaacattggcgaagaggtcaacacgatcgaa
gagatgtacgaaccctacctccttcagatcggctttttgatgcgtaccccgcgggggcgg
gtggtgacccctgcggcctacgaacaccttaagataccctttgaccaggaggaaaattaa
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