Limosilactobacillus fermentum IFO 3956: LAF_0520
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Entry
LAF_0520 CDS
T00699
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfe03019
]
LAF_0520
03009 Ribosome biogenesis [BR:
lfe03009
]
LAF_0520
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAF_0520
Messenger RNA biogenesis [BR:
lfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAF_0520
Ribosome biogenesis [BR:
lfe03009
]
Prokaryotic type
rRNA helicases
LAF_0520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
BAG26856
LinkDB
All DBs
Position
616924..618306
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AA seq
460 aa
AA seq
DB search
MIESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLP
IFSQLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQL
NRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKL
QMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLLT
LGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYIVA
TDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVLIEKLE
ERGITFIPKDLKNGRIVTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGYKRRIKQ
RIKEDERQKVKQAQRHEMRKAKRARQKQHRAERARQQNGR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatcttttgcggaccttcacttggccgactttttaacgccggctctaaaggac
cttcactttgaacgaccaaccgccgttcaagcccgggtgatcccgttgatcctcaacggt
aagagcgtggtgggccaatcgcgaaccgggagtgggaagacccatgcctttttgttgccg
atctttagccaactagcccccaacaaccagacggtccaagccgttatcaccaccccgtcg
cgggaattagcctaccaaatttataacgccgccaagcaactaaaccgctttgcgaccacc
ccgttgacgattcacaactacgtcggtgggaccgacaaggagcaccaagtcgaacaattg
aaccggcgccaaccccaactggtgattgggacgccggggcgaatcttagacctgattaac
tcccaggccttagatatccacacggctagccagttcgtgatcgacgaagccgatatgacc
ttggacatgggctttttagaaacggttgaccaaatcgccgcccgcttccccgaaaagctc
cagatgatggtcttttcggccacgattccccaagggctacggccatttttgaagaagtac
ttggaaaacccggtgattgaagaaattcccaccgaaacggtcatcaaccccaacgtggaa
aactggttgatgtcgaccaaggggcgcgacaaaaacgacctggtctaccgcctgttgacc
ctaggggacccgtacttggccctggtctttgccaacacccgtgaccgggcgacagaactg
gctaactacttgcaagaacggggcttaaaggtcgccctgattcacgggggactggaacca
cgggcccgcaaacggacgatgcgccaaatccgggacatggactaccaatacatcgtggcg
acggacttagccgcccgggggattgacctggagggggtttccttagtcttaaacgatgac
attccaagtgacctggaatacttcattcaccgggtcggccggacgggtcgggcgaacatg
gccgggaccgccatcaccctgtacgcgcccgccgaagacgtcctgattgaaaagttagag
gaacggggcatcacctttattccaaaggacttgaaaaacggccggatcgtcacgacttac
gaccggaaccgccgcaaggcccaccgccgtaagaaggcggccttagacccgaccgttaag
ggctttgtcaagaaggccaagaaaaaggtcaagccgggctacaagcgccgcatcaagcag
cggattaaagaagacgagcgccaaaaggttaagcaggcccagcgccacgaaatgcgcaag
gcgaagcgggctcggcaaaaacaacaccgggcggagcgggctcgtcaacagaatgggcgt
tga
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