KEGG   Limosilactobacillus fermentum IFO 3956: LAF_0690
Entry
LAF_0690          CDS       T00699                                 
Name
(GenBank) hypothetical protein
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
lfe  Limosilactobacillus fermentum IFO 3956
Brite
KEGG Orthology (KO) [BR:lfe00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:lfe02048]
    LAF_0690
Enzymes [BR:lfe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LAF_0690
Prokaryotic defense system [BR:lfe02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    LAF_0690
SSDB
Motif
Pfam: Cas3_HD Cas3-like_C_2 Cas3_C DEAD Helicase_C ResIII AAA_22 AAA_19 HD
Other DBs
NCBI-ProteinID: BAG27026
LinkDB
Position
805003..807726
AA seq 907 aa
MGELTTEELSLWGKKAIRDDQELWLPLVIHLIDAKNVINWLYNHWLTDNQRSLLMIENSE
SVTQNVVKFLGYIHDIGKATTAFQTKQSYAHNDSLDEDIMEKMIRGGFKDIDKLSFLKRS
ASPHALAGEALLEVYGVNKSIAAIIGGHHGKPLSNPVAKDTRYNSENYWPETPGEEQNRW
RKVQEDLFQYGLHLCGFHKSSEIPRVNKIQAVLLEGLLIMADWLASSEYLNDDPSKPLFP
LIDINESAADVNTEQRYQNAINTWQINDEWSAERVSDIDEYYVQHWGFHPREVQLAMCQE
ISKALDPGMMIVEAPMGIGKTEIALTVAEQLASRCGCNGLFMGLPTQATSNAMFDRVEDW
LAKEAKEQDAKLSIKLMHGKAKFNQRNQAIPRAENVQGSGAVVVNEWFTGKKSILEEFTV
GTIDNLLQMGLKQRHLFLKHLGLSGKVVVIDEVHGYDVYMSSYLAKVLQWLGAYNVPVIA
LSATLPKGKRNELLKSYEKGKFGSDQFETEPGWENNEAYPLLSMLDGKHLKQVTNFVSQK
YKYVQVKRINVENNKLIDIVNAKIKDGGVAGIIVNTVKRAEEIADLMPKDVLTIVLHSAF
LAPDRQKIEERLQSMTGKNAARPPRLVVIGTQVLEQSLDIDFDVLFTDIAPMDLILQRVG
RLHRHNIKRPKGLQTPQLYILGINDYDDYGKSNEYIYEKYLLMKTDHFLKEKIALPGDIS
KLVQQVYDTATDSEVYGLKEAKAKFDKDQKIAENKAKVFQIAEPKHRGTIHKWLDWNLPD
DRQGEIKAQAAVRDIQETLEVILLKEIDHQFYLLDGRKLVEVDDKTISDQVIRLPSVVTP
EWKLDTIIKKLEDITSKNLPQWQQSIWLHDSLALILGSKQTTDFFDFRLSYSSNKGLCYE
RLEEKHG
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgggagagctaacgacagaagaactttctttatgggggaagaaagcaattcgtgatgat
caagaactttggttaccattggttatacatttaattgatgcaaaaaatgttattaattgg
ctgtacaatcattggctaactgataatcaaaggtcattgctaatgattgaaaattcagaa
agtgtaacacaaaatgtagttaaatttcttggctatattcatgatattggaaaggcaaca
actgcatttcaaaccaagcaatcatatgcccataatgactcgcttgatgaagacattatg
gaaaaaatgattcgaggtgggttcaaagacatcgataaattatcatttttgaaacgtagt
gcatcacctcatgcattggccggtgaagcgttgttagaagtatatggagtaaataaatct
attgcggccataataggtggtcatcatggtaagcctttaagcaatccagtggcaaaagat
acacggtataattcagaaaactattggccagagacgccaggagaagaacagaatcgatgg
agaaaggttcaagaggatctattccaatatggtctacatttatgcggatttcataaatca
tcagaaattccccgggtcaataaaattcaagcagtacttttagaaggcctattgataatg
gctgactggttggcatctagtgagtatttgaatgatgatccatcaaaaccgctttttcca
cttatcgacattaatgaatctgctgctgatgttaatactgaacagcgttatcaaaatgcc
atcaatacatggcagataaatgatgagtggagtgccgagcgtgtctctgatattgatgaa
tattacgttcagcactggggatttcatccacgtgaggttcaattggcaatgtgtcaggaa
attagtaaggctcttgatcctggcatgatgattgttgaagctccaatgggaattggtaaa
actgagattgctttaacagtagctgaacagctggctagtcgatgtggctgtaatggtctg
tttatggggctgccaactcaagcgacgtctaatgcaatgtttgatcgagttgaagattgg
ttggcaaaggaagctaaggaacaagatgccaagctttcaataaaattgatgcatgggaaa
gccaagtttaatcaaagaaaccaagcaataccaagggcagaaaatgtacaaggttcggga
gcagtggttgtcaatgagtggtttactggcaaaaaatcaattcttgaggagtttactgtt
ggaacaattgacaatttgctgcagatgggattgaaacaacgacatctttttttaaagcac
cttggattgagcggaaaagtagtcgttatcgatgaggttcacggctacgatgtttatatg
tcttcgtatctagcaaaagttctgcaatggttaggtgcatacaatgttccggtaattgcc
ctttctgctactctaccaaagggaaaaagaaatgagcttttgaaaagttatgagaaaggt
aaatttggtagtgaccaatttgagacagagcctggttgggaaaacaatgaggcatatcca
ttactaagcatgttagatggtaaacacctaaaacaagtaacgaattttgtgtcacaaaaa
tataaatacgtacaagttaaaagaatcaatgttgaaaataataagctgattgatatcgta
aatgccaagataaaggatggtggcgtagccggaattattgttaatacggttaaaagagcc
gaggagattgctgatttaatgccaaaagacgttttaacgattgtcctgcactctgctttt
ttggcaccagatcgtcaaaaaattgaagaaaggcttcaaagcatgactggaaaaaatgct
gctcggccgccaagactggttgtgattggtacacaggttttagagcaatcgctagacatc
gatttcgatgttttgtttactgatatcgcaccaatggatttgattttgcaaagggttggc
cgattgcatcgtcataatattaagcgtcctaaaggtttgcaaacccctcaattatacatt
ttagggattaatgactatgacgattatggaaaaagcaatgagtacatttacgaaaagtat
ttgttaatgaaaacggatcattttttaaaagaaaaaatagcattacctggtgatatttcc
aaattggttcagcaagtctatgacacagcgactgacagcgaagtttatggcctaaaagaa
gctaaagcaaaatttgataaagatcaaaaaattgctgagaataaagcgaaagtatttcaa
attgctgagcctaaacatagagggacaattcataaatggcttgattggaatctcccagat
gataggcaaggcgagattaaagcacaggcagcagttcgtgatattcaagagactttagaa
gttattttacttaaagaaattgatcaccaattttacttgctagatggaagaaaattagtc
gaagttgatgataagactatctctgatcaagttatccgcttaccaagtgttgttactcca
gaatggaaattagatacgattattaaaaaattggaagacattacatctaaaaatctgcca
caatggcaacagagtatttggctgcacgattctttggccttgattttaggatcaaaacaa
acgactgatttttttgactttaggttaagctattcatctaataagggtttatgctatgaa
agattggaggagaagcatggctga

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