Limosilactobacillus fermentum IFO 3956: LAF_0845
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Entry
LAF_0845 CDS
T00699
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LAF_0845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfe03021
]
LAF_0845
Transcription machinery [BR:
lfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LAF_0845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
BAG27181
UniProt:
A0ABF7R2B6
LinkDB
All DBs
Position
993058..994200
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AA seq
380 aa
AA seq
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MAKSSKKNRVISNLEDFNQAEYDKAVGALIRNYKKAKNIQYDELTEKIAEPFGLNADGMD
ALLQNVEDAGVSVVDENGDPDLRALKATEKLSSKALKDTTAPSSIKINDPVRMYLKEIGR
VNLLTADEEVALALRIEKGDETAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGL
MKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQ
DLGREPLPEEIGAEMDMDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPA
DHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEA
KALRKLRHPSRSKQLKDFLE
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagagcagtaagaagaaccgggtaatttcgaacttagaagatttcaaccaagcc
gaatacgacaaggccgtcggggctttgattcgcaattacaagaaggcaaaaaacatccag
tacgatgaattaaccgaaaagattgccgaaccgtttggcttaaacgccgacgggatggac
gccctgttgcaaaacgtggaagacgccggggtttccgtggttgacgaaaacggtgacccg
gacctgcgggcactcaaggcaaccgaaaagctgtcctccaaggccttaaaggataccacc
gctccgtctagcattaagatcaacgatccggtgcggatgtacctcaaggaaatcggccgg
gtcaacctgctgacggccgacgaagaagtggcgttggccctgcggatcgaaaagggtgac
gaaaccgctaagcaagaactggccgaagccaacttgcggctggtggtttcgattgctaag
cgttacgtgggtcggggaatgcagttcttagacctaatccaagaggggaacatggggctg
atgaaggcggtcgaaaagttcgactaccgtaagggcttcaagttctccacttacgccacc
tggtggattcgccaggcgatcacccgggcgattgccgaccaggcccggacgatccggatt
ccggtccacatggttgaaacaatcaacaagttaatccggatccaacgccaactcctccaa
gacctcggccgggaaccgctgccggaagaaatcggggccgaaatggacatggacacccaa
aaggtgcgtgacatcctgaagatctcccaggaaccggtctccttggaaacgccgatcggt
gaagaagatgactcccacttaggggactttatcgaagaccacgacgccaccagtccggcc
gaccacgccgcttacgagatgatgaaaaagcagctcgaaaacgtgctggacaccctgacc
gaccgggaagaaaacgtcttacgcctgcgctttggtttggacgacggccggacgcggacc
ctggaagaagtgggacgcgtctttggcgtgacccgggaacggatccggcaaatcgaagct
aaggccctgcgcaagttgcgccacccatcccgttccaagcagttaaaggacttcttggaa
taa
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