Limosilactobacillus fermentum IFO 3956: LAF_0867
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Entry
LAF_0867 CDS
T00699
Name
(GenBank) DNA-directed DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03030
DNA replication
lfe03430
Mismatch repair
lfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAF_0867
03430 Mismatch repair
LAF_0867
03440 Homologous recombination
LAF_0867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfe03032
]
LAF_0867
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0867
Enzymes [BR:
lfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LAF_0867
DNA replication proteins [BR:
lfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LAF_0867
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LAF_0867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAG27203
UniProt:
A0ABF7R2R0
LinkDB
All DBs
Position
1016057..1019356
Genome browser
AA seq
1099 aa
AA seq
DB search
MGFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLH
PVIGVSLPLTFAEGTLDVTLLAKGAVGYQNLTRLSTRAMTDRANQPLTIEDLREGSDDLV
VIVAPQLMLLGVSEQTYAQLGEVADYLGINLDFTAAERQDLQAVAERCGLPLIAFEPVEY
LNEDDYFATQVLRAIKAGHTIEDPLKASQRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVA
VAERCQVHFADQTPVLPAFPTPAGQGVADYLRELCQRGLAKRKLAGDPAEYQARLEHELT
VIHQMGFDNYFLIVWDLMNFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFER
FLNPERAQMPDIDLDLPDNRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFN
LPKYQVDSLSQVIDRVKGPHQTLADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHD
SIHAAGVVLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVET
ALNLIHQHQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIV
AVNALYRPGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGG
FSLGEADLLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRS
HAVAYSKMAFEMAYLKVHFPAEFLAALMETNPDTSKVWAYFSEAKQLGITTHGPAINQSQ
ERVSLVDQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVP
LIDAGALDHLGYNRAEMAEGLKAILEGAEYAGLGLGMAPVVAQRNEYPLAVRLAREHAVL
GTYLSGHPVSQYQDLRTKLKLPTVAQLRPKQRVRLVLMVTRMRKVTTKREHKPMAFLTAS
DETGAVEVTIFNRLFTQLEGELRVNGIYLITAKTEQREGQVQLLADQVTDAQVVNRELHP
ADHRWVLRLPSGVAQTTVTDGIKALAKEHAGNVPVVIYDPVTQKATQLPGQLWLAKQRVV
QEGLINLVGRSNLAFQALS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgtacccttagccgttaagagtatgtactccctactagaggcgccggttcgc
cccgcggagctggtggcggtagctaaagagcggggctaccaggcggtcggccttgttgat
gcgcgggtcttgtacggggccgttaacttcgttcgccgggccaaccaagccgggctacac
ccggtgatcggcgtcagcctaccgctcacctttgcggagggaaccttagacgtcaccctg
ctggccaagggggcggtgggctaccaaaacctaacccgcctctcgaccagggcgatgacc
gaccgggccaaccaaccactaaccatcgaagatttacgggagggttcagacgacctggtc
gtgatcgtggccccgcagttgatgttattgggcgttagtgagcaaacgtacgcccagctc
ggagaagtggccgactacctggggattaacctcgatttcacggcggccgagcgccaggac
ttacaagccgtcgccgagcgctgtgggctgcccctaattgccttcgagccggtcgagtac
ctcaacgaggatgattactttgccacccaggtcttacgggcaatcaaggccggccacacg
attgaagaccccctcaaggccagtcagcgaacgggtcggcactggttgcggccggctgaa
gaggtggcggcggcctaccgggcggcggggcttgcggaagcggcggcccaaacggtggcg
gtggccgaacggtgccaggtccactttgccgatcaaacgccggtcctacccgcttttccg
actccggccggccagggcgtggctgactacctacgcgaactgtgtcaacgggggttggct
aagcgaaagttggccggtgatcccgccgagtaccaggcccgcttggagcatgaattaacc
gtcattcaccagatgggctttgacaactactttttgattgtctgggacttgatgaacttt
gcgcaccaacaccagatcctgaccggacccggccgggggtcggcggccgggtccttggtg
gcttacgccctggcaattaccgacgtcgacccactccaatacgggctgttgtttgaacgg
ttcttgaacccggagcgcgcccagatgccagatatcgatttggacctgccggataaccgg
cgcgaggaggtcttaaactacctccaccaccactacggtcacgaacgagttgcccaaatc
atcaccttcggcagcttggggaccaagcaagtcctgcgcgacgtcagccgggtctttaac
ttacccaagtatcaggtcgactcgctcagccaggtgatcgaccgggttaaggggccccac
cagaccctcgccgacctgttggaaagcgcccagccggtccaaaacctggcccgcgattcc
aagctcgtggcctgcctgctggaagtggcggccaagctagagggcttaccccgccacgat
tcgattcacgccgccggagttgtcttggccgccgaacctttgatcaagacggtgcccctg
caggccggtaacgagccgggggcgatgctcgtgacccagtttgaaaaagacaccgtcgaa
tcactggggctactcaaaattgacctgctgggtttgcggaacttaacgacggtggaaacg
gcgcttaacttgatccaccagcaccagccggactttgacctcacccacattgctttaaat
gaccgaccgacgctggccctttttgaccgcggccagaccagtgggatctttcagtttgaa
tcaagtgggatccgccaaaccttggtcaacttgcacccggataactttgaagagattgtc
gccgtcaacgccctttaccggccgggcccaatggacaacatcaaccacttcatcgccaga
aagaagggccaagaggcggttaacttgccggctaaggaactagccccgattcttgcaccg
acctacggaatcttggtttaccaagaacaggtcatgcaggtggcggcggtgatggggggc
tttagcctgggcgaggccgacttgttacgccgggcgatgagcaaaaagaaactagcgacc
atggcgagcatgaaggaggccttcttagccggggccaacaagcggggctacccgaacgcc
gttgccgaacaggtctttgcctacatcgaccagtttgccaactacggttttaaccgctcc
cacgcggttgcctattcgaagatggcctttgaaatggcctacttaaaggtccacttcccg
gccgaattcctagcggccctgatggaaaccaacccggataccagtaaggtctgggcctac
tttagcgaggctaagcaactagggattaccacccacggaccggcgatcaaccagagccaa
gaacgggtgagcctagtcgaccaggagttgtggctggggttagacatgattaaaggcctg
cgccgtgactttattcgggcaatcattgaagaacgcaaccaacacggcccctaccaggac
ttgcccgacctggtcaaccgcctcgacgccaagtggcacaaggaagacctctttgtaccc
ctgattgacgcgggggccttggatcaccttggttacaaccgagctgagatggccgagggt
ttaaaggcgattttggagggcgccgagtacgccggtttgggcttggggatggcacccgtg
gttgcccaacgcaatgagtacccgctcgccgttcgcctggcccgcgaacacgcggtcctc
ggaacttacctttcggggcacccggttagtcagtaccaagacctccgaaccaagttaaag
ttaccaaccgtggcccagctacggcctaaacagcgggtacggttggttttaatggtgacc
cgaatgcgaaaggtaacgaccaagcgcgagcacaaaccaatggcctttttaaccgctagt
gacgaaaccggggcagttgaagtgacgatctttaaccgcctcttcacccagctcgaaggt
gagttaagggtcaacgggatttacttgattacggccaagaccgagcaacgagagggccag
gtccaactcttagccgatcaagtgaccgacgcccaggtggtcaaccgggaattacacccg
gccgaccaccgttgggtactccgcttacctagtggggttgcgcagaccacggtgaccgac
gggatcaaggccttggctaaggaacacgccggcaacgtcccagtggtgatttacgacccg
gtcactcaaaaagccactcaactgcccgggcaactgtggttagctaagcaacgggtggtc
caagagggtttgattaacctggtggggaggagcaatttggccttccaagcgttaagttag
DBGET
integrated database retrieval system
