KEGG   Limosilactobacillus fermentum IFO 3956: LAF_1254
Entry
LAF_1254          CDS       T00699                                 
Name
(GenBank) DNA-directed RNA polymerase omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
lfe  Limosilactobacillus fermentum IFO 3956
Pathway
lfe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lfe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LAF_1254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lfe03021]
    LAF_1254
   03400 DNA repair and recombination proteins [BR:lfe03400]
    LAF_1254
Enzymes [BR:lfe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LAF_1254
Transcription machinery [BR:lfe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LAF_1254
DNA repair and recombination proteins [BR:lfe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LAF_1254
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF4880 Dbr1_C
Other DBs
NCBI-ProteinID: BAG27590
UniProt: B2GD58
LinkDB
Position
complement(1443135..1443419)
AA seq 94 aa
MILFPSVDKLLERVDSRYSLIMLASKRAHEIDKYRIDKWRAAHPDKAGETVSLEGDKPLL
LDHYDSNKSVGMALEEIEAGLVTIDPDQHEDLQD
NT seq 285 nt   +upstreamnt  +downstreamnt
atgatcttatttccatccgttgataagctattagagcgggttgactcccgttactcacta
atcatgttggctagcaagcgggcccacgaaatcgacaagtaccggatcgataagtggcgg
gcggcccacccggataaggctggcgaaacggtcagcttagaaggcgacaagccgctcttg
ttggaccactatgactccaacaagtccgttgggatggcgctggaagaaatcgaagcggga
ttggtaacgatcgaccccgaccaacacgaagacttacaagattaa

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