Limosilactobacillus fermentum IFO 3956: LAF_1317
Help
Entry
LAF_1317 CDS
T00699
Name
(GenBank) DNA-directed DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03030
DNA replication
lfe03410
Base excision repair
lfe03420
Nucleotide excision repair
lfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAF_1317
03410 Base excision repair
LAF_1317
03420 Nucleotide excision repair
LAF_1317
03440 Homologous recombination
LAF_1317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfe03032
]
LAF_1317
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_1317
Enzymes [BR:
lfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LAF_1317
DNA replication proteins [BR:
lfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LAF_1317
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LAF_1317
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAF_1317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAG27653
LinkDB
All DBs
Position
complement(1495840..1498500)
Genome browser
AA seq
886 aa
AA seq
DB search
MAKQLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAALV
AFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIGT
LAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQY
IDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEKI
ARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVDQ
APIEYQVLDEDNMALVDQLGATVCFQLEMPDANYHESPLAGFVIGDGKRWLVSRNADLLT
TAPLKKLLEDPAVERDVFNAKAQLVGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVL
AAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP
LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK
QLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRAPIVQDILAYRQISKLQSTYITGLL
KVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIFSS
DYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFG
IVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHRRR
YLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIHDE
LVFEAPEEEIAILEELVPSIMDSAVKLDVPLKVESKSGATWYDLKK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcagcttttattaatcgacgggaatagcatcgtcttccgggcgtttttcgcc
atgcacaaccagatggagaagtttaccaaccaggcggggttacacacggcggccatctac
gggttcaaactgatgctggatcacatattaaaggaggttcaaccagacgccgccttggtg
gcctttgacgccggcaagaccacctttcggaccgaaaagtacgccgattacaaggggagc
cgtgataaaacgccgggtgagctagtggaacaactgccctacgtacgcaagctggtcgaa
gcaagtggcctccacgcttacgaactagttaattacgaggccgatgacatcattgggacc
ctggccaaggaaggggaccaggccggctttgagacgatgattgtgaccggggaccgtgat
ttaacccagctggccaccgaccacaccaccgtggccgttaccaagcgcggggtgacccaa
accgaggagttcaccccggcatacatgcaagaaaagctgggcgtcaccccacgccaatac
atcgatgtgaaggccctgatgggggatagctccgataactaccccggggttaccaagatt
ggtgaaaaaacggcggtctccctgattcaggaatacggctctttggacgggttgtacgaa
aacatcgccgcgatgaaaaagtccaagcgcaaggaaaacctgatcaacgaagaaaagatt
gctcgggagtgccaagacctagcgactatccgccgggacgctccgctggcaatcggctta
aaagacatcgcctaccagggaccggacgaagccgccctaattgacctgtaccaagaatta
gacttcaagtcctttttaaaggagctaggcgcccaagaagggggcgcacaagttgaccaa
gcgccaatcgaataccaggtgttagacgaagacaacatggcgttggttgatcaactcggg
gctaccgtttgctttcaattagaaatgccggacgctaactaccacgaatcaccactggcc
ggctttgtaattggcgatggcaagcggtggctagtcagccgtaacgccgacctattaacc
accgccccgctaaagaagctactcgaagacccagcggttgaaagggacgtcttcaacgcc
aaggcccagctggtcggcttacaccggttaggggttgacctggccggggtcgactttgac
ttgctcttggcttcttacctgctcaacacgagtgaaaacgccaatgacttaggggtgctg
gcggccgcccacgattaccaccaggtccaaactgatgaagaggtttatgggaagggtgct
aagcgggccattccggctgacgacgaggtctttttcacccacctagccaaaaaggcccgg
gcgattagggaccttaaagaacccctataccaacagctgaccgataacgagcaactaccg
ctctacgaagacattgaacgccccttgtccgcggtcttggcccacatggaaatcaccggg
attcatgtcgacgcagcgaccctaaaggagatgggctccaagttagttgaacgtgaggcg
gagctagaacaggcgatttaccaagaagccggcgaggagtttaacattaactccccgaag
cagctgggcgtaatcttatttgaaaagatgaagctaccggtcatcaaaaagaccaagacc
ggctactcgacggccgtcgacgtcttagaaaagctggccgaccgggcaccgatcgtccaa
gacatcttggcctaccggcaaatcagcaagctgcaatcaacttacatcaccggcttactc
aaggtgatccaccaagacgaccaaaagatccacacccgctacttgcagaccctaacggcg
accggccgtctctcgtcagtcgacccgaacctgcaaaacattccggttcgcctggaagaa
gggcgccaaatccggcgggcctttaccccctcggcaccggggtggaagatcttttcgtcg
gactactcgcaggttgaactgcgggttttggcccacgtcaccggcgataagaacatgcag
gctgatttcttggcgggcaaggacatccacgccgccacggccaagcggatcttccacttg
caaagcgaagacgaagtgacccccaacatgcgccggcaggccaaggcggtcaacttcggg
attgtgtacgggatttccgattacggcctagcccaaaacatccacgtctcccgcccacag
gcccacgaattcatccagagttacttcaaggaattcccgggggtggaaaagtacgttcac
gacatcgtggaactggctaaacagcagggctacgtcgaaaccctgacccaccggcgccgt
tacctgccggaaattcacgcgaagtcctttacccagcgttcctttgccgaacgaatggcc
atgaacaccccgattcaggggtcggctgccgacatcatcaagattgccatgatccgaatg
gaaaaggccttaaaggagcggggcttacgggcccggatgctcttgcagatccatgacgaa
ctggtctttgaagcgccggaagaagaaatcgccatcttagaggagctggttccttccatt
atggactcggccgtaaagctagacgtaccactgaaggtggaaagcaagtccggggcaacc
tggtacgacctgaaaaaataa
DBGET
integrated database retrieval system
