Limosilactobacillus fermentum IFO 3956: LAF_1476
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Entry
LAF_1476 CDS
T00699
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03420
Nucleotide excision repair
lfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAF_1476
03430 Mismatch repair
LAF_1476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_1476
Enzymes [BR:
lfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAF_1476
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAF_1476
MMR (mismatch excision repair)
Other MMR factors
LAF_1476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PcrA_UvrD_tudor
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_12
AAA_22
FWWh
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAG27812
LinkDB
All DBs
Position
complement(1681867..1684137)
Genome browser
AA seq
756 aa
AA seq
DB search
MQNQSMLEGMNDKQSEAVLTTEGPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILAI
TFTNKAAREMKERVAKLLGEAGNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQR
TLIKRICEEQNIDTKKFEPRQLLSAISNAKNAMEDPATFAKNHQRPFDRMVARVYEAYQK
ELERNQTLDFDDLIMKTIELFKKAPETLTYYQNKFHYIHVDEYQDTNDAQYELVHMLAEK
YENICVVGDADQSIYGWRGANMNNILNFEHDYPSAHSVMLEQNYRSTQTILKAANEVIAN
NLERKDKNLWTENGAGEKISYYRAQNEHDEAQFIVKKIQEERAKHNYQYQDFAILYRTNA
QSRVIEETFLKSTVPYTMVGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGI
GMTSVERLREFAQESNLPLLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLSIT
DLTDQVLERTGYLAELQKDKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDF
LAGLALVSDQDDVDEAEPAVTLMTLHAAKGLEFPVIFLIGMEEGVFPLSRAMTDNKELEE
ERRLAYVGITRAKKKLYITNAFSRMLYGHIQRNRPSEFVEEITPELMQSENQNQGERSLS
GRIAGGNSYAFKAATATTYRRPSDAGKRVAPKTNTGTGAEKKSWNTGDKVNHKKWGQGTV
VSVNGTGENMELDIAFPQQGVKRLLASFAPITKVED
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
gtgcagaaccaatcgatgttagagggaatgaacgataagcaaagcgaggccgtgttgacg
acggaaggccccctactagtaatggcgggggctggttccggtaaaacccgggtcctgacc
caccggatcgcttacttgattgaggagcgtcacgtcttgccgtggcacatcctagcaatc
accttcactaacaaggccgcccgggaaatgaaggagcgggtcgctaagctcctaggtgag
gctggcaacgacgtctgggtgtcgaccttccacgccctgtgcgtacggattttacgtcgt
gacattgaacagctaggctacaaccgagcctttacgattgccgacaccagcgaacaacgg
acgctgattaagcggatctgcgaggaacaaaacatcgacaccaagaagtttgaaccccgg
caactgctgtcggcgatttcaaacgccaagaatgcgatggaggatccggccacctttgcc
aagaaccatcaacgcccctttgaccggatggtggcgcgcgtttacgaagcctaccaaaag
gaactggaacgcaaccagaccctggattttgacgacttgatcatgaagacgatcgagctc
ttcaaaaaggcgccggaaactttgacctactaccaaaataagttccactacatccacgtt
gacgagtaccaggacaccaacgacgcccagtacgaattggtgcacatgctggccgaaaag
tacgaaaacatctgcgtggtgggggatgccgaccagtcaatttacggctggcggggggcc
aacatgaacaacatcttaaactttgagcatgactaccctagcgcccattccgtgatgttg
gaacaaaactaccgctcaactcaaacgatcttaaaggcggccaacgaagtgatcgccaac
aacttggaacgtaaggacaagaacctctggaccgaaaacggcgccggggaaaaaatctcc
tattaccgggcccaaaacgagcacgatgaagcgcagttcattgtcaaaaagatccaagaa
gaacgggccaagcacaactaccaataccaagacttcgccatcctttaccggaccaacgcc
cagtcgcgggtgattgaagaaactttcctaaagtcgacggttccttacacgatggttggt
ggccaccgcttctacgaccggatggaaatccgcgacctcttggcctacctgaccttgatt
gtcaacccgttggactcgatgtcctttgaacgggtggtcaacacccccaagcgcgggatt
gggatgacctccgtcgaacggttacgggagtttgctcaggagtccaacttgccactgctg
gcggcggcccaaaacgttcaaaacgccaacgccatctcggcacggacccgcaataagatc
gaagaatttggccagttaatcgccgccttacaagacgaggccaaggtgctttcgatcacc
gatttgaccgaccaggtactggaacggaccggctacctagccgaattgcagaaggataaa
accctccaggggcaaacccggcgggaaaacctggaggaatttaagtcggtgaccgccgaa
tacgaccgccaacacgaagacgatgagggaatggaccacctacaaaagctaaccgacttc
ctggccggtttagccctggtgtccgaccaagacgacgtcgatgaagcggaacccgccgtt
actttgatgaccctccacgccgctaaggggttggaattcccggtcatcttcttgatcggg
atggaagaaggggtcttcccgttgtcccgagccatgaccgacaacaaggaattagaagaa
gaacggcgcttggcttacgtggggatcacccgggctaagaagaagctttacatcaccaac
gccttttcgcggatgctgtatggtcacatccaacgcaaccggccgtcggagtttgtcgag
gaaattacccccgaacttatgcaatcagagaaccaaaatcagggtgaacgctcgttaagc
ggtcggatcgccgggggcaactcctacgcctttaaggccgccacggccaccacttaccgg
cgcccttctgatgcggggaagcgggtcgccccgaagaccaacaccgggaccggggccgaa
aagaagtcttggaacaccggcgacaaggttaaccataagaagtgggggcaagggaccgtg
gtctccgttaacggaaccggagaaaacatggaactagacattgcctttccacagcagggg
gttaagcgcctcttagcaagttttgccccaatcaccaaggtggaggattaa
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