Limosilactobacillus fermentum IFO 3956: LAF_1522
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Entry
LAF_1522 CDS
T00699
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAF_1522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfe03021
]
LAF_1522
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_1522
Enzymes [BR:
lfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAF_1522
Transcription machinery [BR:
lfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAF_1522
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAF_1522
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAG27858
UniProt:
B2GDX6
LinkDB
All DBs
Position
complement(1714469..1718116)
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNNFESMEIGLASPMKIRSWSYGEVTKPETINYRTLKPEKDGLFDERIFGPTKDFEC
ACGRYKRARYNKRVCERCGVEVTSAKVRRERMGHIELAAPASHIWYFKGIPSRMGLVLDM
SPRELEEVIYFASYVVLDAGDTGLEKKQLLSEPRYRELKEEYGNRFTAEMGAEAIQKLLA
DVDLAKEATELKAVLKEATGQKRTRAVRRLDILEAFLKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSMKMNQMGLPVP
MAMELFKPFIIHELTKRNLATNVKAAKRMIDKRDEKVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKAMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVAPSQDMVIGNYYMTTEDKAREGEGMIFKDTNEARMAYRNGYVALQTRVGVL
TSSFDKKPFTAEQRQKIMVTSVGKLLFNNIMPEDYTYINEPTADNLQNGVPDKYFLEPGE
DIHAYLENAPLVPPFKKGFLSDIIADVYKIYKVTVTSQLLDRIKDLGYYESTISGLTVGI
ADVTDLKEKPEIIEKAHKQVALVTKQFRRGLITDNERYERVIGIWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPSGKIMELPILSNFREGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLEVTAITNGNEMIEPLY
DRILGRYTMKSVFNPETGEKIVGKNVLLNEEMAQKIIDAGVQKVTIRSAFTCNTEHGVCE
RCYGRNAATGDQVEAGEAIGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VESRNPKGKATISEVTGQVVSIEENPAEQTKDVTIKGETDTRTYTLPITARIRVAEGDDI
HRGRAINEGSIDPKEMIRVRDVLSTETYLLSEVQNVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDVLPGELLDISQFRDANYQTLISGGIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMGAYRNIKPKEVSVNTGATDGA
ITSIREMEEQLKDQD
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgattgacgtcaataattttgaaagtatggagatcggtctggcttccccaatgaagatt
cggagttggtcttacggtgaggttaccaagccggaaacgatcaactaccgaactttaaag
ccagaaaaagacggtctctttgatgaacgaatcttcggcccgaccaaggactttgaatgt
gcctgtggtcgctacaagcgggcgcgttacaacaagcgggtctgtgagcgttgtggggtt
gaagtaacctctgccaaggtccgccgggaacggatgggtcacattgaactggctgctcct
gcttctcacatctggtacttcaaggggattccgagccggatggggctggtcttggacatg
agcccacgggaactggaagaagtaatctactttgcttcttacgtcgttttagacgccggg
gacacgggactggaaaagaagcaattgctttccgaaccacgttaccgggaactcaaggaa
gaatatggcaaccgtttcaccgctgagatgggggccgaggcgatccaaaagctactggcc
gacgtagacctggccaaggaagcaaccgaattaaaggcggtcttaaaggaagcaactggg
caaaagcggacccgcgcggttcggcgcctggatatcttggaagcctttctcaagtccggg
aacaagcctgaatggatggtgatggacgtaattccggttatgccacctgacttacggccg
atggttcaactggaaggtggccgctttgccacttccgacttgaacgacttgtaccggcgg
gtcattaaccggaacaaccggttgaagcgcctgttagaattaaacgctccgggcatcatc
gttcaaaacgaaaagcggatgctccaagaagccgttgacgccctgattgataacggtcgc
cgtggccgtccggttgccggtcctggtaaccgtccgctcaagtccttgtcccacttactt
aaggggaagcaaggacggttccgtcaaaacctgctcgggaagcgggtcgactactctggt
cgttccgttatcgatgttggtccatccatgaagatgaaccaaatggggttgccggttcca
atggcgatggaactcttcaagccatttatcattcacgaactgaccaagcggaacctggct
accaacgttaaggcagccaagcggatgatcgacaagcgtgacgaaaaggtcttcgatgtc
ttagaagacgtgatcaaggaacaccctgttctcttgaaccgcgcccctaccctgcaccgg
ttagggatccaagccttcgaaccaatcctggtttccgggaaggccatgcgtttgcaccca
ctggtttgtgccgcttacaacgccgacttcgacggggaccagatggccatccacgtacca
ctgtccgatgaagcccaggccgaagcgcgtctgttaatgttagccgctcaccacatcctt
tcacctcgtgacggggaaccaatcgtggccccatcccaggatatggttatcggtaactac
tacatgacgactgaagacaaggcccgtgaaggggaaggcatgatctttaaggacaccaac
gaagcccggatggcctaccgtaacggttacgtggccttacaaacccgggttggggtgctg
acttcttcctttgacaagaagccgttcaccgctgaacaacgccaaaagatcatggtgacc
tcggttgggaagttgctcttcaacaacatcatgcctgaagattacacttacattaacgaa
ccgaccgccgacaacctgcaaaacggggttccggacaagtacttcttggaacctggtgaa
gacattcacgcctacttagaaaacgcgccgctggtgccgccgtttaagaagggcttcttg
tcggacatcattgccgatgtttacaagatctacaaggtgaccgtcacctcccaacttctt
gaccggatcaaggaccttggttactacgaatccacgatttccgggttaaccgtcgggatc
gccgacgtgaccgacttaaaggaaaagccggaaatcatcgaaaaggcgcacaagcaagtg
gccctggttacgaagcaattccgccgtggtttgatcaccgataacgaacgttacgaacgg
gtcattgggatctggaacgatgccaaggatgaagttcaaaacaagctgatcgaacacatg
gatatccacaacccaatcaacatgatgtccgactctggggcccgggggaacatctccaac
tttacccagctggccggaatgcgtgggttgatggcttccccatccgggaagatcatggaa
ctgccgatcctttctaacttccgggaaggcctttccgtcttggaaatgtttatctcttcc
cacggggcacggaaggggatgaccgacacggccttgaagactgccaactctggttacttg
acccggcggctggttgacgtggcccaagatgtgatcgttcgcgaaaaggactgtggcacc
gaccgtggtctggaagtgaccgccatcactaacgggaacgaaatgatcgaaccgttatac
gaccggattttgggtcgttacacgatgaagtccgtctttaatccggaaaccggggaaaag
atcgtcggtaaaaacgtcctcttgaacgaagagatggcgcaaaagattatcgatgcgggc
gttcaaaaggtaacgattcgctccgccttcacttgcaacaccgaacacggggtttgtgaa
cgttgttacggacgcaacgccgctaccggggaccaagtggaagccggggaagcaatcggg
acggtggccgcacagtcaatcggtgaaccagggacccagctgacgctgcggaacttccac
accggtggggtggccggtaacgacgacatcacccaagggcttccgcgtatccaagaaatt
gtggaatcacggaacccgaaagggaaggccacgatctccgaagttactggtcaggtggtt
tccatcgaagaaaacccagctgaacaaactaaggacgttacgatcaagggtgaaaccgac
acgcggacttacaccctgccgatcacggcccggatacgggtggccgaaggtgatgatatt
caccgtggtcgtgccatcaacgaagggtcaattgatccaaaggaaatgattcgggttcgc
gacgtcttgtccacggaaacctacctgctctccgaagtgcaaaatgtttaccgtatgcag
gggattgacctgctcgacaagcacgttgaaatcatgattcgccaaatgatgcgtaaggtg
cgggtgatggatcctggtgatactgatgttttaccgggtgaactgttggacatcagccaa
ttccgcgatgctaactaccaaaccttgatttccgggggaattccggccactgcccggcca
gttatcctcgggatcactaaggcggcccttgaaactaacagtttcctttcggccgcttcc
ttccaagaaacgacgcgtgtccttaccgacgccgccatccggggcaagaacgacccgctg
gtggggctcaaggaaaacgttattatcgggaagatcattccagccggaacggggatgggt
gcttaccgcaacatcaagcccaaggaagtcagtgtcaacactggcgcaaccgatggggcc
attacctccatccgcgaaatggaagaacaactaaaggatcaagactaa
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integrated database retrieval system
