Limosilactobacillus fermentum IFO 3956: LAF_1563
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Entry
LAF_1563 CDS
T00699
Name
(GenBank) hypothetical phage protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LAF_1563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_1563
Enzymes [BR:
lfe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LAF_1563
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LAF_1563
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF2642
Motif
Other DBs
NCBI-ProteinID:
BAG27899
UniProt:
A0ABF7R494
LinkDB
All DBs
Position
complement(1765091..1765753)
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AA seq
220 aa
AA seq
DB search
MQIEYPQQLVDQVEAAIKDRPLMGFVPGAGPNHPAVMLVGEAPGRSETDSQVPFSGTSGK
ELIKLLEEIGLSRATVHITSVVCKRPYSVKVVTNKKTGQRVTKYPNRTPTKKEVLAFGPL
FDWELKTVAPQVVVPLGNTSLQRLLGPEAKIGDLHGQVLHQSVLETRPDHQGYQMGTTPY
YIVPMYHPAAFLYARRLEPTVRADWQAFGKWLKEQHLMPQ
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaattgagtatcctcagcagttagttgaccaagtagaggcagcgatcaaggatcgt
cccctaatgggctttgtaccgggggctggaccaaaccatccggcggtaatgctggtgggt
gaggctcccgggcgcagtgagaccgatagccaggtgccctttagtgggacttcgggtaag
gaattaatcaagttgctagaagaaattggtttgtcgcgggcgaccgtccacatcacctcg
gtggtctgcaagcggccgtactcggttaaggtggtcaccaataagaaaactgggcagcgg
gtcaccaagtaccccaaccgcacccccaccaaaaaggaggtcctagcctttgggcccctc
tttgactgggaattaaagacagtcgctcctcaggtggttgtgcccctaggcaacaccagc
ctccaacgcttgctgggaccagaggccaagattggtgacttgcacggtcaggtcttgcac
cagtcggtcttagaaacccggccggatcaccagggttatcaaatggggacgaccccttac
tacattgtgccaatgtatcacccggccgcctttttgtacgctcggcgcctagaaccgacc
gtgcgtgccgactggcaggccttcgggaagtggctaaaagaacagcatttgatgccgcaa
taa
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