Limosilactobacillus fermentum F-6: LBFF_0036
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Entry
LBFF_0036 CDS
T02669
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0036
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBFF_0036
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LBFF_0036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
DRE2_N
Motif
Other DBs
NCBI-ProteinID:
AGL87958
LinkDB
All DBs
Position
41287..45024
Genome browser
AA seq
1245 aa
AA seq
DB search
MATLQFVLGSASFDHQQVMLDRLAAQYQQAPNDTYLYLVPNHVKFTTEVAVLKGLKKRLK
QTGNYAQANVAVLSFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDLLKM
FRGESERQGFATAVTKQLVELQNANIQPADLAPDQETGIIKRALASQTGGGRASQSTVFT
DKMTVLYEIYRRFEAAVTTHVTAPDRSAMLLNHLEAADLSTTHVYLDRFAGEFSAQEQLI
VDALIQRAADTTVSLILDRDYRGRELPSQNNLYYRSAKQYQDLLNLATQQVGVDVLDPIV
LNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRVAELNRVATKIRQ
LVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRYQIPVFNDNQRPMATSPLATFTAALFKV
LKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTENYCLKFGKGGRS
WFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTATTGRELATKFYQF
LLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILGDQVAPTEQPGQL
VAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGATDDVMPEVKASE
GLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLYMSAPLMSSDDSE
LTLSPYLKGLARHFNQWDDQNNVPTTDLPDRPNPRASEDDVWSFVAAPAVTMGNLIEVER
LSKDTGRKLTSAWRDVARALTRHDEGLTGRLNDIRDGQYAKNEAVPLQPELAARLYTTNR
QGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKSGTLNHDALAFFVQS
VIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANNSRVNLQLQVAKQLI
TTMAKTLCLQATQTDAQPVAVEKAFGQADWTGENQAAELPALTFDLTRAGLGEGAKVSLR
GRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYLNALQAANPGKQLLG
SLYLRLYVPTVDAGKEGTAEELKEHLYQGITINDDAVLAALDHGLGEKGATLLSIKKKSK
KDTSRFKVSADDQFSAKAGSNLVSPTDLKRLMDHNAELIKEAAVQILQGQNEIRPYRRQV
GTTAETGLAFSDFLDVSRFDQALDDYKEIELTDADVEAKFEQEEE
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccttacaatttgttttggggagtgcgtcctttgaccaccagcaagtgatgctc
gatcgcttggcggctcagtaccagcaagcacccaatgatacctacctttacttagtgccc
aaccacgttaagttcaccaccgaagtagccgttttaaaggggcttaaaaagcggttgaag
caaaccggtaattacgcccaggctaacgtggcggtcctgtccttttcgcgcttggggtgg
tttttgtgtaaggacgaccccgattaccaaaagccccgcctttccaacgtggggatggcg
atggtggtcgccaaaatcattcgggaactcaaggcagaatcccccgacctcttgaagatg
tttcggggcgaaagcgaacgccagggctttgccacggcggtgaccaagcagctggtggaa
ctacaaaacgccaatattcaaccggccgacctggcgcctgatcaggaaaccgggattatt
aagcgggccctggctagtcagacggggggtggccgggccagtcaatcgacggtctttacc
gacaagatgaccgtcctgtacgaaatttaccggcgctttgaggcggcggtcacgacccac
gtcacggcgccggaccggtcagcgatgctcttaaaccacctcgaagccgccgacctatca
acgacccacgtttaccttgatcgctttgccggtgaatttagcgcccaggaacagttgatt
gtcgacgccctgattcaacgggctgccgacaccacggtttctttgatcctcgaccgggat
taccggggacgggagttgccgagtcaaaacaacctctattaccgctcggccaagcagtac
caggacttattgaacctcgccactcagcaggtgggcgtggatgtgttagacccgattgtt
ttgaatcagccgaaccaacgacgggttagcgacgccttggtgggggtcgaagagtggatg
gaagcagatgcccgcttcgctctgccagacaggttgccggccccgaccgaccaagtaggc
tttttcaccgccccaacccgggtggccgaactcaaccgggtcgccaccaaaattcgccag
ctcgttgccaccggtcagtaccgctaccgggactttttagtggttacgaggcacctggac
ggctaccaaacgatgctagaaccgatctttagccgctaccaaattccggtcttcaatgat
aaccagcgcccaatggcgacctcgccgctagcgaccttcaccgccgccttgttcaaggtc
ttaaaggactactaccaagaagccgacgtgatggagttgttaaagaccggcctcttggtt
cccgagacgccggaagagctccaacaggaggggcgtgcgaagcgaaaccccaacaccttc
atgaccgccgtctaccggaccgaaaactactgcctgaagttcggcaagggggggcggtcg
tggtttgacgagcggccgtggcgactggaaggagaacaaccagaaagcgatgcgctcaag
cgccaaaacgcccagattaactgggtcaaaaattacatcaaagacgaattggccccggcc
ctggccgacctacaaacggccactaccgggcgggagttagccaccaagttctaccagttc
ctcttggatcaaggggtccgtcaccaactttattcctgggcccaccaagcccaagaaagc
gggcagttaacccagctgcgcgacgttcagcaaatttggcagacctttggcaccctcttg
gacgagtacgtaaccatccttggcgaccaggtggccccgaccgagcagccgggacagttg
gtggccgagtttgccgacctcatgaacgccggttttaacgccgggcgctacgcccaaatc
ccgtcgactttggatcaagtgttggtttcggaaagcgggatgatccaggacaaccagcgc
aaggtcctcttcatcatgggggcgaccgatgatgtgatgccggaagtcaaggccagcgag
gggctcttatccgaccccgaccgggaacttttgaagcggggcttaaacgacgaccagttc
ctgcccatcagcgggaccgaccagatcaacaacgagcccttcttaaactacctgagcatg
ctgtcggtaaccgagcgcctctacatgagcgcccccctgatgagcagcgacgacagcgag
ttaaccctctccccgtacctgaagggcttggcccggcacttcaaccagtgggatgaccaa
aacaacgtcccgactaccgacttgccagaccggccgaacccgcgggcaagcgaagacgac
gtgtggtcctttgtggcggcgccggccgtgacgatggggaacctgattgaagtggagcgc
ctgagtaaggacaccggccgtaagctgactagtgcctggcgggacgtggccagggcccta
acccgccacgacgagggtttgacggggcggttaaacgacatccgggatggccagtacgcc
aaaaacgaggcggtgccactgcaaccggaactggcggcccgcttgtacaccactaaccgc
cagggccaagtcaccaaccagttgacggcttcgattagccagctggagaagttctaccaa
aacccgtacgactacttcttgcgttacggtttgcacctgaagaagcgcgacgaattagag
gtctccagcgacaagtccgggaccttaaaccacgacgccctggccttctttgtccaaagc
gtgatcgacgaaccggacctgcagctggccgacttggttaaagaagagcaccaagggcgc
caagccgagttgattgaccaagcctttgagcaggccatgaaccaacaagaggagttgcgg
gaattggcggccaataacagccgggtcaacttgcaactgcaggtggccaagcagttgatt
accaccatggccaagaccctgtgcctgcaagcaacccaaaccgacgcccaaccggtggcg
gtcgaaaaggcctttgggcaggcggattggaccggggaaaaccaagccgccgagttacca
gcgttaacctttgacctgaccagggcggggctcggtgagggcgccaaggtcagcctgcgg
gggcggattgaccgcttagacgagttgaaactgggcgagcaaacttaccagctggtggtt
gattacaagtcctacaacaaggcgtttgacttggtcgacgcctacgccggccaggccctg
caaatgctggcctacctcaacgcgttacaggcggctaacccgggcaagcaactactgggg
agcctgtacctgcgtttgtacgtcccgaccgttgacgccggcaaggaggggaccgccgag
gagctaaaagagcacctctaccaggggatcacgattaacgatgacgccgtcttggccgcc
ctcgatcacgggcttggtgaaaagggtgccaccctgttaagcatcaaaaagaagagtaaa
aaagacaccagccgctttaaggttagtgccgacgatcaattcagcgctaaggcgggctcc
aacctggtctcaccaaccgatttgaagcgcctgatggaccacaacgccgaactgattaag
gaagccgccgttcagatcctgcagggccaaaacgagattaggccgtaccggcgccaagtc
ggcaccaccgcggagaccggcctggcctttagcgacttcttagacgtttcccgcttcgat
caggccctggatgactacaaggaaatcgagctgaccgacgccgacgtggaagcaaagttt
gaacaagaggaggaatag
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